Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02863 ATGCCCACAAAACTCTTCTTATCACAACTTCGTCTTCTCCAATTCCAACCTATGAAACTTCACTCTTCTCCTTTTCTCTCTCGAACCTTCTTCAAATTCTCTCACCTCTCTCTCCGCAACGCACCCTTTCGTCTCCGCCCTTTCTCGTCCCGCCCAGACAGGATCCGTTCTTCCAAAAGCCTCATCGACGACGAAGCCGACCTCAGTAATTGGGTCGACGCGTTGCGAACCGATAACTTCGCTTCTCAGAGGATGGATTCCCGACCCGCACCGGTTGATGACGGTCGGTCTGGCCCGAGGAAGAGTGGTGTTGGTAGGGGCTCTTCTTTAGGGAAGAGGAGAGGTGATGATTTCAGCAAGGGAAAACCTAATTTGAATTCGAAAAGGAGGTTTCAGTTGAGTAGtgataatgatgatggtgatagtgatgaggttgtggtgaGAGGAAAGTTTAAGGGTGGTGGTGGAAGTATTGGTAAGTTTCTTAGTGAAGAAGAAACTGAAGATGTTTCTGAAGGAGAAGAAGAGAGTCGCGGTCGTGATGATGAGGAGATAGTGAATAAGAGTAGAAGTGTTTTGTTTGGTAAACAAAATGTGGTGTCAAATGCTCCTAGACCTTCTTCACCTAGTGGAACTGCTTCTTATTTAAGTGATTCCAGGTTCGACCAGTGTTCAGTCTCCCCTTTGTCGTTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACACTTCCTGTAATTCTAAAAGGTAAGGATGTCCTTGCCAAGGCTAGAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATCGAAGTTGTCGTGAAGTCTCCACCAGGTGATCGTGATCAAAGGCGGCCACCAATTTTTGTTCTTGTTATATGCCCAACTCGAGAGCTTGCATCTCAAGCCGCTGCAGAAGCCACTAAACTGCTTAAGTATCATCCAACCATCGGTGTCCAAGTTGTGATTGGAGGAACAAGACTTACTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCCACACCTGGAAGGCTTAGAGATCATATTGAAAACACTGCTGGTTTTGCATCTAGACTTATGGGGGTGAAGGCCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGTAAAGATATTGAGAAAATAGTTGCTGCAGTCCCTAAACAACGACAGACACTTATGTTTTCTGCAACCATTCCAGATGAGGTGCGTCAAGTTTGTCATATTGCTTTAAGAAGGGATTTTGAATATATTAATACAGTTCAGGAGGGTTCTGAAGAGACACATGCACAGGTCCGCCAGACGCATTTAGTTGCCCCTTTAGACAAGCATTTCTCTTTAATCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGTACAACTGCTATGGTAACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTGACGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCGCGTGGAGTTGATTATCCAGATGTTACTCTTGTTTTACAGGTTGGCCTACCAGCTGATAGAGAACAGTATATACATCGACTAGGTAGAACAGGGCGAAAAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTCTTAGCTACCGCAAAGGATTTGCCTATTGGGAAAGCTCCAGAACCTTCAGTTGATCCTGACACTAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTGGAGATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCCAACAAGAAAATTGGGAAAGATAAGCTCATGTTAGTGGAGCTTGCAAATGAATTCAGTAGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTTGTCCTTGGCAAGATGGGTCTTAGAAATATCCCTGGTTTACGTTCCAAATAG 2064 0.4356 MPTKLFLSQLRLLQFQPMKLHSSPFLSRTFFKFSHLSLRNAPFRLRPFSSRPDRIRSSKSLIDDEADLSNWVDALRTDNFASQRMDSRPAPVDDGRSGPRKSGVGRGSSLGKRRGDDFSKGKPNLNSKRRFQLSSDNDDGDSDEVVVRGKFKGGGGSIGKFLSEEETEDVSEGEEESRGRDDEEIVNKSRSVLFGKQNVVSNAPRPSSPSGTASYLSDSRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPGDRDQRRPPIFVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLTLEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIVAAVPKQRQTLMFSATIPDEVRQVCHIALRRDFEYINTVQEGSEETHAQVRQTHLVAPLDKHFSLIYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLATAKDLPIGKAPEPSVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKIGKDKLMLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02863 687 Gene3D - 442 665 IPR027417 -
Car07g02863 687 MobiDBLite consensus disorder prediction 191 218 - -
Car07g02863 687 MobiDBLite consensus disorder prediction 132 148 - -
Car07g02863 687 CDD DEADc_MSS116 226 435 - -
Car07g02863 687 Pfam DEAD/DEAH box helicase 244 421 IPR011545 GO:0003676|GO:0005524
Car07g02863 687 MobiDBLite consensus disorder prediction 82 218 - -
Car07g02863 687 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 189 685 - -
Car07g02863 687 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 31 128 - -
Car07g02863 687 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 468 618 IPR001650 -
Car07g02863 687 SMART ultradead3 238 451 IPR014001 -
Car07g02863 687 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 250 433 IPR014001 -
Car07g02863 687 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 219 247 IPR014014 GO:0003724
Car07g02863 687 Pfam Helicase conserved C-terminal domain 465 572 IPR001650 -
Car07g02863 687 Gene3D - 195 434 IPR027417 -
Car07g02863 687 MobiDBLite consensus disorder prediction 110 124 - -
Car07g02863 687 CDD SF2_C_DEAD 448 581 - -
Car07g02863 687 SMART helicmild6 491 572 IPR001650 -
Car07g02863 687 PANTHER RNA HELICASE 31 128 - -
Car07g02863 687 PANTHER RNA HELICASE 189 685 - -
Car07g02863 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 587 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02863 Car-Chr7 54421602 54426974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02863 219 600 Eukaryotic Initiation Factors Gene Family AT3G19760 28.571 7.00e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02863 - - gmx:100795739 997.267