Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02846 ATGACTGCAAATAGTGGGAGAGAAACTGAGAAACATCATAATAAGAGGAAAACCAATGACCCTTTACTAAAGTCACCTAGATTGTGCACACCTATTAGAAAGGATTGGCCACATATTTTACCAAATGATGATTTGATTGGTAATGAGATTACTGGTTTGACTAGAAATGTTGCTTCCTTAGCTGGATCTGGACCAACTAGTACTAGTTTTTGTTCCACCACAGATCCTAAACACATTGTTGAAGAGTTACATGTTAGGAGTTATAAGCCTCATAGGAAGAATCAATTAGCTATTAGAGAAAATGCATTGAAGGTTGAAGAACAGATACCACTTAGATTAAGCAAAGGACAAAAAGGGATTGATTCTGAGTTTTTGAGCCTCAAGTCTATGTCTAGAAAGAACTTGAATCATGAACCACATAGAGTTTTTGGTAATATAAGCAATGCAAATGTTGTTACTAGTATAATGCAAAGAACTTCATCTACATCTAGTTATCCACCATTGGTAGTAGAGCAAACAATGAAGGGAAAGGGAATTATTTGTAATGATTTTAACATGTCCGGCGCGGAATGTTTTAATGATGGACTAATCTTAAGAGAGTGGATGAAGTTTGAAGGCTACAAAATGAAGAAATCAGAAAGGCTATATATATTTAAACAGATTTTGGAATTGGTTGATTTTGCACACTCTCAAGGATTTGTCTTGCAAGACATGAAACCATCTTGTTTCGCCTTATTGACTTCGAATAAAATTAAGTACATTGGTTCATACCAACAAGTGTTAGATGACAGAAAATCATGTTTCACTTTATTTAAGTCATGCTTTATGGCCATCATGACATGCAATGTGACAAAGAAAATGCCTTGGGAACAAGATACTTGTGCTTGCCAAAGTTTGAGTACAAAGAAGCAAAAGCTTTGTGAGGAGACAACCTCTCTTAAGCAGCAGCATCATTTCAATTGTATTCACGGCTGTAGGACTACAACATTGAATCAAACTGATTCTGACACAAACATGCACATGGAATCAAAACATGCTTTTACAGAAGAAAAGCAGTTTATATGTGAAACCATTGAGTTAGAGGAGAAGTGGTATTCTAGTCCAGAAGTGCTCAGTGATGGAACTTGTACATTTTCATCAAATGTTTATAGCCTTGGAGTTATTCTTTTTGAGTTGCTGTGCAATATTGAGTCATTGGAAGCACATTCAACTGTGATGTTTGATATGCGCCATAGAATCTTACCGCCAAAATTTCTATCTCAAAATGCAAAGGAAGCTGGCTTTTGTCTATGGCTTCTGCACCCTGAACCTTCTTCTCGTCCGAATACCAAGATGATTTTAGAATCTGAATTTATATGCGAATTAGAGGAATCAAATGCTGCAGATAATGTTATAGTATCTGAAGAAGATGTAGCTGAAAAAGAGGAATTACTACATTTTCTATTTTCAGTTGAAGAAGAAAAGAAAAAAGATGAAGCCAAATTGGCAGAAGAGCTAAAGTGCTTGAATGAAGATATTAAGGAGCTAGAAAGAAATCATTCATATATGACTAATTCAGCCTTTTCTTTGGCACAGTTGAACTATCAACATTTTCAAGATTCTTCAAATGCAGCTATTACTAAATCTATTCCAATGTCATTTGTTGATGAAGCAAGATTTATGAACAATATAACTCAACTAGAGAATTGTTACTTTTCCATGAGATTCCAAGGCCTGCTCAAGGAGGCTTCAGTTGTTAAAAGCGGTGATAAAAGTGTGATGGAAAGTAGATGGAGATTGCCTCATTTAGAGAATGTTATTAATAATCCAAAGAGAGTTCAAGGTTCTACTGGTTGTCTAGGACCATTCTTTGAAGGTTTATGCAAATTCGCTCGTTACAACAAGTTTGAAGAGCGTGGAACATTGAGAAATAGAGATCTTCTTAGTTCTTCCAATGTGATATGCGCCTTAAGTTTTGACCGCGATGAGGACTACATTGCAGCAGGTGGAATTTCAAAGAAAATAAAGATATTTGATCTCAATGCTATTTCAAGTGATTCTGTAGACATTCAGTACCCCGTTGTCGAGATGTCCAACAAATCGAAGCTTAGTTGTGTTTGCTGGAACAGTTATATTAAAAACCATTTGGCATCTACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACTGGTCAGCCACTGTCTCAATACAAGGAGCACCAAAAGAGAGCTTGGTCCGTTCACTTTTCGGTGTCCGACCCAAAAACGTTTGCCAGTGGAAGTGATGATTGCTCTATCAAACTGTGGAATATCAGCGAGAGAAATTCTATAGGAACCATATTGAGTCCTGCAAATGTATGTTGTGTTCAGTTCTCTTCATACTCCACAAATCTTTTGTTTTTTGGATCTGCTGATTACAAGGTGTACGGTTATGATCTTCGTCACACTAGAATCCCTTGGTGCACATTATCCGGTCATGAAAAAGCTGTTAGCTATGTAAAGTTTATAGATGCACAAACAATTGTGTCTGCTTCCACTGATAACTCTTTGAAGCTTTGGGACCTGAAGAAAACTAGCTCAGCTGAGTTGTCATCTGATGCTTGTGACTTAACCTTTAGAGGTCATAGTAATGAAAAGAATTTTGTTGGTTTATCTGTCTTGGATGGATACATTGCATGCGGTTCGGAATCTAATGAGGTATACTGTTATCACAAATCTCTGCCAGTGCCAATGGCTTCTCACAAATTCGAGTCGATCGATCCAATTTCTGGTCATACAAATAGTTCTGATAACAATGGACAGTTTGTTTCTAGTGTCTGCTGGAGAAAGAAGTCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTGTGAAACTACTGCAGTTGGTGTGA 2877 0.3712 MTANSGRETEKHHNKRKTNDPLLKSPRLCTPIRKDWPHILPNDDLIGNEITGLTRNVASLAGSGPTSTSFCSTTDPKHIVEELHVRSYKPHRKNQLAIRENALKVEEQIPLRLSKGQKGIDSEFLSLKSMSRKNLNHEPHRVFGNISNANVVTSIMQRTSSTSSYPPLVVEQTMKGKGIICNDFNMSGAECFNDGLILREWMKFEGYKMKKSERLYIFKQILELVDFAHSQGFVLQDMKPSCFALLTSNKIKYIGSYQQVLDDRKSCFTLFKSCFMAIMTCNVTKKMPWEQDTCACQSLSTKKQKLCEETTSLKQQHHFNCIHGCRTTTLNQTDSDTNMHMESKHAFTEEKQFICETIELEEKWYSSPEVLSDGTCTFSSNVYSLGVILFELLCNIESLEAHSTVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNTKMILESEFICELEESNAADNVIVSEEDVAEKEELLHFLFSVEEEKKKDEAKLAEELKCLNEDIKELERNHSYMTNSAFSLAQLNYQHFQDSSNAAITKSIPMSFVDEARFMNNITQLENCYFSMRFQGLLKEASVVKSGDKSVMESRWRLPHLENVINNPKRVQGSTGCLGPFFEGLCKFARYNKFEERGTLRNRDLLSSSNVICALSFDRDEDYIAAGGISKKIKIFDLNAISSDSVDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYKEHQKRAWSVHFSVSDPKTFASGSDDCSIKLWNISERNSIGTILSPANVCCVQFSSYSTNLLFFGSADYKVYGYDLRHTRIPWCTLSGHEKAVSYVKFIDAQTIVSASTDNSLKLWDLKKTSSAELSSDACDLTFRGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPMASHKFESIDPISGHTNSSDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQLV 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02846 958 SUPERFAMILY WD40 repeat-like 640 955 IPR036322 GO:0005515
Car07g02846 958 SMART serkin_6 137 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g02846 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 732 774 IPR001680 GO:0005515
Car07g02846 958 PANTHER PROTEIN SPA1-RELATED 2 193 958 IPR044630 GO:0009640
Car07g02846 958 PANTHER PROTEIN SPA1-RELATED 2 2 193 IPR044630 GO:0009640
Car07g02846 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 818 851 - -
Car07g02846 958 ProSiteProfiles Protein kinase domain profile. 55 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g02846 958 Gene3D Transferase(Phosphotransferase) domain 1 197 465 - -
Car07g02846 958 ProSitePatterns Trp-Asp (WD) repeats signature. 836 850 IPR019775 -
Car07g02846 958 PRINTS G protein beta WD-40 repeat signature 709 723 IPR020472 -
Car07g02846 958 PRINTS G protein beta WD-40 repeat signature 752 766 IPR020472 -
Car07g02846 958 PRINTS G protein beta WD-40 repeat signature 836 850 IPR020472 -
Car07g02846 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 818 858 IPR001680 GO:0005515
Car07g02846 958 SUPERFAMILY Protein kinase-like (PK-like) 198 456 IPR011009 -
Car07g02846 958 Coils Coil 485 519 - -
Car07g02846 958 Pfam Protein kinase domain 362 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g02846 958 SMART WD40_4 860 899 IPR001680 GO:0005515
Car07g02846 958 SMART WD40_4 683 722 IPR001680 GO:0005515
Car07g02846 958 SMART WD40_4 768 807 IPR001680 GO:0005515
Car07g02846 958 SMART WD40_4 628 672 IPR001680 GO:0005515
Car07g02846 958 SMART WD40_4 910 956 IPR001680 GO:0005515
Car07g02846 958 SMART WD40_4 811 849 IPR001680 GO:0005515
Car07g02846 958 SMART WD40_4 725 765 IPR001680 GO:0005515
Car07g02846 958 MobiDBLite consensus disorder prediction 1 27 - -
Car07g02846 958 MobiDBLite consensus disorder prediction 1 22 - -
Car07g02846 958 Gene3D - 617 958 IPR015943 GO:0005515
Car07g02846 958 Pfam WD domain, G-beta repeat 726 765 IPR001680 GO:0005515
Car07g02846 958 Pfam WD domain, G-beta repeat 817 849 IPR001680 GO:0005515
Car07g02846 958 PANTHER LIGASE COP1, PUTATIVE-RELATED 2 193 - -
Car07g02846 958 PANTHER LIGASE COP1, PUTATIVE-RELATED 193 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02846 Car-Chr7 54069537 54073822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02846 750 898 Miscellaneous Gene Families AT5G08390 25.828 1.47e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Car07g02846 Pkinase 6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02846 K16240 - gmx:100802144 1310.05