Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02788 ATGGCGGATAACGGCGACTTCGCCGGCACAATCTGTTCAATCTGCTACGAAAATCTCAACCCCATTACCGAAGACCTTCAATCAGTCTCCATCTGCGGCCACGTCTTTCACGAACTTTGTTTGCAGCAATGGTTCGAATACTGTGGGACATCGAAGAAACATACTTGTCCAGTTTGCAAGCAAGGTTGCAAGGCGAAAGATGCGTGTCGGCTTTATTTTCAATCGATTGGAGATGTAAAAGAAGCTGTTTTGACTCAGAAGCAACTCGGTGTCGAAGAAAACGCTGGTGTTTTGAGAAAGGAAGTTAAGAGATTGGAGGTTAAAGTTTCGGGTATTAGTTCGGTTTTGGAACGACAAACTAAGGAGTTAGATGAACTTAAAGATGAGCTCTGTACTTGCAAGGAGCAGACAAAGAAAGAAACAGCATTAAAGAATGAAGCGTTGAATCAGAAAGCATCAATGCAAATCCAGCTTCATGTGAAAACAGAGGAGCTTGAGAAGTCAAGTTTGGAGCGTTTTAGATTGCAAGAGAGAAATATGGCTTTGGCTAAAGAGCTCGCAGCATTAAAGTTAGTGTCTGATCTGAACCTTGATGAAGATGATGTTTTGAAGCTTGCCACTTTGGGTAATGGAGCCAACAGTAAAGAAACAGTAGACACACTAAAAAGATCTCTTGTCCTGAGGAATAGGAGTTACAAAGAGTTAATGGCCAAGTGCAATCTTCTGGGGAGAGGTGAGGCTCGGTATAATAAAAAGCTTGAGAAGGCTAAAGAGAAGATCACTAAACTGAAGGCAAGAGTACAAGAACTGGAGACAACAATGGAAGTAAAACAGAACGAATATTTGAGGCATCTGAAAATTGCAAAGAATATTGAAAATAAAATCAATTCTAATTCTGATGCATTGACGGCAAACAAATTTTCTTCCAAAGAGCAAAGCAAACAAAGTTCAACACCCAAGTCTGGAACGGATCTGAACAAGAATGACAACATCAAATCTTTACAATCTTTGGATACAGAGAAATCCAAAGCTACAAAAAATAAGGATGTGAATATTATTAATAATGGAAGTAAAACTACCTTGTCTCTTGATAAAGAGATTGATTGTATCGTTATCGATGAAGATGACTATGAAGATCATGACAAGGTTGATCTAGGAAAGCCAGAAGCAGCACCTGGAACAAAGACTAAAACATCATTGCAAGGAATATGTAATTTGGCCGAGTCTTCAAAAGTTGATAGTGACAATGATATAGTTGACGTTACTATTGGGACTATGGATGATGATGTGACACTACAAGCCAATGCTAAACAAGTTCAACCTATGGTTAACATTAGAAAAGAGTCACCATTAACAACTTCAAGTTCAGTGGACATATGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCAAAGATTCTTGGGTAAATGGTGCAAGCGTGGACAAAATGGTGAATCAACATCCACAAATGGTTCAAGTAACGGGAATTTGATATCTGTAGGAGCTGATGGTAGAGGTGGCAAAGTCAAAGTTCTAAGGACTCCAAGCCAAGCTTTCTCGGATGGTAAGGAAAATTCAGCTTTGAAGAGGTTGAAGATTACACCTAATAAAGCAAGTGGTTTGCAATCCCGGGGGTGCCTGCAGATTGAACACTTTTTTGGGAGGGTCAGTCAGTAA 1680 0.3988 MADNGDFAGTICSICYENLNPITEDLQSVSICGHVFHELCLQQWFEYCGTSKKHTCPVCKQGCKAKDACRLYFQSIGDVKEAVLTQKQLGVEENAGVLRKEVKRLEVKVSGISSVLERQTKELDELKDELCTCKEQTKKETALKNEALNQKASMQIQLHVKTEELEKSSLERFRLQERNMALAKELAALKLVSDLNLDEDDVLKLATLGNGANSKETVDTLKRSLVLRNRSYKELMAKCNLLGRGEARYNKKLEKAKEKITKLKARVQELETTMEVKQNEYLRHLKIAKNIENKINSNSDALTANKFSSKEQSKQSSTPKSGTDLNKNDNIKSLQSLDTEKSKATKNKDVNIINNGSKTTLSLDKEIDCIVIDEDDYEDHDKVDLGKPEAAPGTKTKTSLQGICNLAESSKVDSDNDIVDVTIGTMDDDVTLQANAKQVQPMVNIRKESPLTTSSSVDICFSGGLLGPDGTQRFLGKWCKRGQNGESTSTNGSSNGNLISVGADGRGGKVKVLRTPSQAFSDGKENSALKRLKITPNKASGLQSRGCLQIEHFFGRVSQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02788 559 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Car07g02788 559 SMART ringv_2 11 60 IPR011016 GO:0008270
Car07g02788 559 CDD RING-H2 12 60 - -
Car07g02788 559 MobiDBLite consensus disorder prediction 306 342 - -
Car07g02788 559 SMART ring_2 12 59 IPR001841 -
Car07g02788 559 Coils Coil 246 280 - -
Car07g02788 559 Pfam Ring finger domain 11 60 IPR001841 -
Car07g02788 559 MobiDBLite consensus disorder prediction 306 333 - -
Car07g02788 559 Coils Coil 109 129 - -
Car07g02788 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 62 IPR013083 -
Car07g02788 559 SUPERFAMILY RING/U-box 11 65 - -
Car07g02788 559 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02788 Car-Chr7 53518025 53522577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02788 1 559 C3H Transcription Factor Family AT4G01270 41.343 5.75e-127 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02788 K11985 - gmx:100812811 703.745