Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02738 ATGGATCGCGGGGACCAAATGGCAGCATTATCCGGCTCTGCACCCTACTATATGCATAGGGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAATTCACCCGGTATTCGTCCAATGTCGAATGCCAATTCACCGTTTCAATCAAGTATTGGAGGTGGTGGTACTATTGGATCCACATTACCGTTGGATTCATCTGGAATTTCATCGCAATGTATCAATGTAGGTGCTCCTTCTGGAGCTGCTTCAACCGGTGAAACTGTCAAAAGAAAGAGAGGAAGGCCGAGAAAATACGGGGCAGATGGAAGTGTGTCGTTGGCATTGACTCCAACAACACCAGCTGCAAGTCATCCTGGATCCATACTGCAAGTTCAGAAACGCGGTAGAGGCCGCCCTCCAGGGTCCGGAAAGAAACAACAGTTGGCTTCTTTCGGTGGTTTGATCTCTGGTTCAGCTGGGAATGGTTTCACTCCTCATGTCATCACCATTGCAATTGGAGAAGACATTGCAACAAAAATCGTGGCATTTTCGCAGCAGGGACCTAGAGCTATATTTATTATGTCAGCTAATGGTGCAGTCTCCACCGTGACGCTTTGTCAAGCTTCAACATCTGGGGGATCAGTCACATATGAGGGACGCTTTGAGATACTAAGCCTGACAGGCTCTTACTTGGTTGCTGATAACGGTGGCTCGCGAAACCGAACGGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATTGGTGGAGGGGTCGGTGGAGTGCTCATTGCCGCAAGTCCTGTTCAGGTGATAATTGGGAGCTTTATGTGGGGTGGACCAaagacaaagaacaagaagaatgaagatttagaaggtcaagaagTTGGTATGGAGCAAGATCATCATGGAGTCCATAATGCAATTGCAATGAATAGCATTTCACCAAATCAAAACCTTAATCCACCATCTATCGGTTCTTGGCCAGCATCGCGTCCATTGGATATGCGTAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 1032 0.4554 MDRGDQMAALSGSAPYYMHRGLPGSGNQHELHNSPGIRPMSNANSPFQSSIGGGGTIGSTLPLDSSGISSQCINVGAPSGAASTGETVKRKRGRPRKYGADGSVSLALTPTTPAASHPGSILQVQKRGRGRPPGSGKKQQLASFGGLISGSAGNGFTPHVITIAIGEDIATKIVAFSQQGPRAIFIMSANGAVSTVTLCQASTSGGSVTYEGRFEILSLTGSYLVADNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASPVQVIIGSFMWGGPKTKNKKNEDLEGQEVGMEQDHHGVHNAIAMNSISPNQNLNPPSIGSWPASRPLDMRNSHIDIDLMRG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02738 343 CDD DUF296 157 271 IPR005175 -
Car07g02738 343 MobiDBLite consensus disorder prediction 105 119 - -
Car07g02738 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 311 - -
Car07g02738 343 Coils Coil 338 343 - -
Car07g02738 343 MobiDBLite consensus disorder prediction 77 141 - -
Car07g02738 343 MobiDBLite consensus disorder prediction 27 58 - -
Car07g02738 343 ProSiteProfiles PPC domain profile profile. 153 292 IPR005175 -
Car07g02738 343 MobiDBLite consensus disorder prediction 19 58 - -
Car07g02738 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Car07g02738 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 311 IPR039605 GO:0003680
Car07g02738 343 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Car07g02738 343 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Car07g02738 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 277 - -
Car07g02738 343 Gene3D - 158 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02738 Car-Chr7 52587510 52594173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02738 1 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.833 1.66e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02738 - - gmx:100799791 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01540 03 60934944 60941184 Car07g02738 07 52587510 52594173 PCT