LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g02732	ATGAACAACAACAGAGCGAGATATCCACCTCCTGGGATCGGCCCCGGACGTGGAGGTtccaatcccaacctcaacctgaatctgaaccaaaataccaaccagaatccgaaccagaacccgaacatgaacAATCAGTTTCAGCACAGGCCATCTTATCAACACCATAACCAAcagcaacagcaccaacagcagcaacagcaacaacagcagcaGCAACAACAATACTATGTGCAGAGACAAATGGTgcaacagcaacagcaacaacagcagcagcagcagcagcaacaacagTGGCTGAGAAGGGCGCAGCTGGGTGGTTCAGAATCTAACAACGTTGTTGATGAGGTTGAAAAGACCGTGCAATCTGAAGTCGCTGACCCTAGTTCTCAAGAATGGAAGGCCAGACTAAAGATTCCGCCACCTGATACACGCTATAGAACAGAGGATGTGACAGCTACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATCCCAATTGCTCTTACTGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCTTTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCAACACGAGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATCCAAGTTATGGTTACAACAGGTGGTACCAGCCTAAAAGATGATATAATGCGTTTATATCAACCAGTCCATTTACTAGTTGGAACCCCAGGAAGGATATTGGACCTTGCTAAGAAGGGTGTTTGTGTTCTTAAAGATTGCTCTATGCTTGTCATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCCATACAGCAGCTTATTCATTTTCTTCCTACAAACCGTCAAATTCTGATGTTTTCAGCAACATATCCTGTTACTGTGAAGGATTTCAAAGATAGGTATCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTCAAGGGTATTACACAATTTTATGCATTTGTTGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTCTTTTCTAAGCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCACGCAAAGATGTTGCAAGACCATCGTAACAGAGTATTCCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCGGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCGGTGAATTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGCCGGTGA	1593	0.3672	MNNNRARYPPPGIGPGRGGSNPNLNLNLNQNTNQNPNQNPNMNNQFQHRPSYQHHNQQQQHQQQQQQQQQQQQQYYVQRQMVQQQQQQQQQQQQQQQWLRRAQLGGSESNNVVDEVEKTVQSEVADPSSQEWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLIHFLPTNRQILMFSATYPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g02732	530	Gene3D	-	117	360	IPR027417	-
	Car07g02732	530	CDD	DEADc_DDX6	158	358	-	-
	Car07g02732	530	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	187	357	IPR014001	-
	Car07g02732	530	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	1	530	-	-
	Car07g02732	530	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 12	1	530	-	-
	Car07g02732	530	MobiDBLite	consensus disorder prediction	20	66	-	-
	Car07g02732	530	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	303	311	IPR000629	-
	Car07g02732	530	SMART	ultradead3	175	371	IPR014001	-
	Car07g02732	530	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	156	184	IPR014014	GO:0003724
	Car07g02732	530	Pfam	Helicase conserved C-terminal domain	382	488	IPR001650	-
	Car07g02732	530	CDD	SF2_C_DEAD	368	497	-	-
	Car07g02732	530	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	367	527	IPR001650	-
	Car07g02732	530	Gene3D	-	361	529	IPR027417	-
	Car07g02732	530	Coils	Coil	54	74	-	-
	Car07g02732	530	Pfam	DEAD/DEAH box helicase	181	345	IPR011545	GO:0003676\|GO:0005524
	Car07g02732	530	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	226	510	IPR027417	-
	Car07g02732	530	SMART	helicmild6	407	488	IPR001650	-
	Car07g02732	530	MobiDBLite	consensus disorder prediction	1	66	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g02732	Car-Chr7	52522401	52533352	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g02732	156	523	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.378	2.03e-93	289

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g02732	K12614		-	fve:101307921	842.417