Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02725 ATGTCTTTCACTGGAACTCTTGATAAATGCAAAGCATGTGACAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAAATATACCTTACCATAAAAACTGCTTCAAATGCAGCCATTGCAAGGGATGTCTTACGATGAGTACATACTCCTCTATGGATGGAATTCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTTGCAAAGTCTTCTGACAAACAAAATGAGCTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGTGGTACTTTGGACAAATGTGCAGTTTGCACTAAAACAGTCTATCCTTTGGAAAAGGTGACACTTGAAGGTGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAACTATGCTGCTCTTGATGGTGTCCTGTATTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGTACCTATAGCCATGTACTCAACTCAACTGCACACAAGAGGAATGGTTCTTCACCACCTTCTGAACCAATTGAAGTTGAAGAGCcatcagagtcatcagcagcagcagcagcaCCTGAGGAACCACCAGAAGAAACCTCTTGA 633 0.3886 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKNCFKCSHCKGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKQNELNRTPSRLSSMFSGTLDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGTYSHVLNSTAHKRNGSSPPSEPIEVEEPSESSAAAAAPEEPPEETS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02725 210 Gene3D Cysteine Rich Protein 100 168 - -
Car07g02725 210 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Car07g02725 210 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Car07g02725 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Car07g02725 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Car07g02725 210 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Car07g02725 210 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Car07g02725 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Car07g02725 210 MobiDBLite consensus disorder prediction 173 210 - -
Car07g02725 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Car07g02725 210 Gene3D Cysteine Rich Protein 5 72 - -
Car07g02725 210 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Car07g02725 210 Pfam LIM domain 104 159 IPR001781 -
Car07g02725 210 Pfam LIM domain 10 65 IPR001781 -
Car07g02725 210 SMART lim_4 9 61 IPR001781 -
Car07g02725 210 SMART lim_4 103 155 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02725 Car-Chr7 52398072 52400136 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Car07g02725 LIM 7.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02725 - K09377 gmx:100800234 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01530 03 60867004 60869984 Car07g02725 07 52398072 52400136 PCT