Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02684 ATGGAGGATGAACGTGATGCCGAGTATGCAATCAGACGACTTGATCAAACAGAATTTGGTAGAAAAGGGCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAACAGAAGGTCTGGTGGTGATTCAAAAAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATCATAAATTTTGATCCCGTTCATACCAGGTCAAGGGATTTAGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGAAAGAATTTTGCTTTTATCCAATTTGAAACCCAGGAGGAAGCCACTAAAGCTTTGGAAGCTACTAACCTGAGCAAGTTTATGGACCGTGTTATCACAGTTGAGTATGCTATAAGAGATGATGATGTCAGAAAGGATGGATACAGTCCTGATAGAAGAGGTCGCGACTCCCCTGATGGGAGGTACGGTCGTGGCAGATCCCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGACTATGGTCGTGGATCGAATCCAGCTTCTAGACCAGAGCCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATGAATGGAAGATATGATAGCCGATCTCCCCCACCTCGAGATAGGTCACGAGATATGTCACGAGATAGGTCACGATCCTGA 654 0.448 MEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRSRDLERHFDPYGKISNIRIRKNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVRKDGYSPDRRGRDSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPMNGRYDSRSPPPRDRSRDMSRDRSRS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02684 217 PANTHER - 1 171 - -
Car07g02684 217 SUPERFAMILY RNA-binding domain, RBD 48 150 IPR035979 GO:0003676
Car07g02684 217 SUPERFAMILY RNA-binding domain, RBD 1 43 IPR035979 GO:0003676
Car07g02684 217 SMART rrm1_1 56 122 IPR000504 GO:0003723
Car07g02684 217 MobiDBLite consensus disorder prediction 130 217 - -
Car07g02684 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 119 IPR000504 GO:0003723
Car07g02684 217 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 171 - -
Car07g02684 217 MobiDBLite consensus disorder prediction 25 55 - -
Car07g02684 217 MobiDBLite consensus disorder prediction 180 217 - -
Car07g02684 217 MobiDBLite consensus disorder prediction 25 45 - -
Car07g02684 217 MobiDBLite consensus disorder prediction 130 149 - -
Car07g02684 217 Gene3D - 1 45 IPR012677 -
Car07g02684 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 126 IPR000504 GO:0003723
Car07g02684 217 Gene3D - 46 135 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02684 Car-Chr7 51621356 51624588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02684 7 129 Eukaryotic Initiation Factors Gene Family AT3G16380 28.462 3.97e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02684 K12893 - gmx:100797778 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02684 07 51621356 51624588 Car07g02684 07 51621356 51624588 ECH