Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02683 ATGTCTGGAGCTGAAGCTGCAAAATATGCTTCTGCTacaaacaacataaccaaatcaaacaaaccaaacaTGAGAAGATTCATTGGTGTGAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATCAAAGACTCATCTCAACATGTAAGATTATGGCTTGGAACCTATGACACACCAGAAGAAGCAGCTCGAGCTTACGACGAAGCCGCTCGAGCTTTACGCGGAGAAAACGCTCGAACCAACTTCGCCGCATCAGTATCGATTAACCAAAACACAGGAAAATCAGATCAAGGACTAATATCATCACCAAATGAATTGAGAAACAGTTTAAGCTTTGCTTCCTTGAAAGCCAAGTTAAGTAAGAATCTTCAAAGTATTATGGCAAGAGGTAGTGATCATAACAACATTAACAAGTCTTCAAAGAGTAGAGTGAGTGACCATTTTACCTTTGCTAGCATATTCAACCGTAGGAGTACTAATTATCATCAAATCTCTGCATTGGATATGAAGAACATTGAAAAAGTTGTGCAGCCTAGCATAATTGTTCCACCTAATGATGGTGATCATCATCCTAATCATAATCATAATTACCCTTCTAGTGTTTCTGATTGTAGTTCTGAATGGTTTGGATTTCAGAATCATGGATTAGATTCTGATGGTTCTGATATAGTGGAGaatattaataatattaataataatGCTGTTAGTGTTGGTGATCAAGGTTTTTTGGATCAACTCATGGGGTGGATTGATGATAGTTCTGATATTTGTGCAAGTGATATTCAAGGTTCAAGTAGTAAGAGGTTTAAGGTTTCTTCTTCTGTTCTTGTTCCTCCAACTTTCTCTGGATCTTCTCCCTATGATTGTGGTTCACCTTTTAGTGGTTATGCATCTCCATATAATAGTTGTGGATCCCCTTGTAATGGTCATGCTTCTCCTTATTATGGTAGGAAGTGA 957 0.3689 MSGAEAAKYASATNNITKSNKPNMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAASVSINQNTGKSDQGLISSPNELRNSLSFASLKAKLSKNLQSIMARGSDHNNINKSSKSRVSDHFTFASIFNRRSTNYHQISALDMKNIEKVVQPSIIVPPNDGDHHPNHNHNYPSSVSDCSSEWFGFQNHGLDSDGSDIVENINNINNNAVSVGDQGFLDQLMGWIDDSSDICASDIQGSSSKRFKVSSSVLVPPTFSGSSPYDCGSPFSGYASPYNSCGSPCNGHASPYYGRK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02683 318 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Car07g02683 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 262 - -
Car07g02683 318 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Car07g02683 318 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Car07g02683 318 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Car07g02683 318 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Car07g02683 318 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Car07g02683 318 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Car07g02683 318 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Car07g02683 318 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02683 Car-Chr7 51615804 51617462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02683 18 83 AP2-EREBP Transcription Factor Family AT5G19790 68.182 8.98e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car07g02683 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02683 K09286 - gmx:100799444 359.377