Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02680 ATGGATATGAAGGTTGCGAAGAATATTAGTACCCAACGAGTCATTCCAAAACCATGCCACTATTGGCTTGCTGGTAGATGCAACAGAAACCCTTGTAGGTTTTTACACGAAGCAACACCACACACATTCACTGCCTCTTGTAATGTAAACGCTGGATATCACAGTTCAAGAAAGCGCCATTCCTCCTCTGAATCTGAGAAGCCCCTTCCTAAGCGCAATTCAAAGACTGTCTTGATTAGAAAGAGTGGAGATGGTGGAGACAGGACTCCAGTTGCTGAGGCTTCTCAGAAACCTTCACCAATTATCTGCAAATACTGGATGGACGAAAACTGTGTTTATGGTGATCATTGCCGATATTTACATTCGTGGTTTTACGGTGATGCTTTGTCCACATTAACAAAGCTTCAAGGACACAAGAAGCTTGTTACTGGAATTACACTTCCAGTTGGATCAAACAAACTTTATTCTGGAAGTACTGATGGGACACTTCGGACATGGGACTGTCATTCTGGTAAATGTGATAATGTGATGAATCTTGGTGCTGAAGTCACGTCTTTGATCAGTGAGGGCCCTTGGATTTTTGTTGGTCTGCCAAATATTATCAAGGCATGGAATCTTCAGACTGCATCACAGTTTACCCTTGATGGACCTAAGGGTCGAATCCTTGCCATGGTTGTTGGCAAAGATACACTATTAGCTGGAGCAGAGGATGGCGTAATTTCTGCATGGAGAGTCAGCTCTGAACCCAGTTCTTCTTTCGAAATGGTTGCCTCACTACATGGCCACACTAAATCTGTGGTTTGCCTTACCATTGGATGCCGCAAGATGCTTTACTCAGGATCAATGGACCAAACCATTAAGGTTTGGAATCTTGACACATTTGAGTGTACAATGACACTCCATGGGCATACTGGCGCAGTCACATCCCTTATATGTTGGGACAATTTCTTGTTATCTGGTTCATCTGACTGCACCATTAAGATCTGGGCTGCCACTGAAGAGGGACCTCTAAAAGTGATATATTCACAAAATGTGGAAAACGTTGTTATTGCACTTAATGGGATGACTGATGCAGAAGGCAAACATATATTGTTCTGCTCCTGCAAAGACAATTCAGTTCGCCTGTATGAATTACCATCATTTTCAGAGAGGGGTAGATTGTTTGCTAGACGAGAATTTGGATCAATAGAGATTGGTTCTGGTGGACTATTCTTCACCGGAGATGGTACTGGTTTGATGACGGTCTGGAAATGGTTGGAAGATCCCAAATTGGCAGGATCCTCTTGA 1287 0.4312 MDMKVAKNISTQRVIPKPCHYWLAGRCNRNPCRFLHEATPHTFTASCNVNAGYHSSRKRHSSSESEKPLPKRNSKTVLIRKSGDGGDRTPVAEASQKPSPIICKYWMDENCVYGDHCRYLHSWFYGDALSTLTKLQGHKKLVTGITLPVGSNKLYSGSTDGTLRTWDCHSGKCDNVMNLGAEVTSLISEGPWIFVGLPNIIKAWNLQTASQFTLDGPKGRILAMVVGKDTLLAGAEDGVISAWRVSSEPSSSFEMVASLHGHTKSVVCLTIGCRKMLYSGSMDQTIKVWNLDTFECTMTLHGHTGAVTSLICWDNFLLSGSSDCTIKIWAATEEGPLKVIYSQNVENVVIALNGMTDAEGKHILFCSCKDNSVRLYELPSFSERGRLFARREFGSIEIGSGGLFFTGDGTGLMTVWKWLEDPKLAGSS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02680 428 ProSitePatterns Trp-Asp (WD) repeats signature. 277 291 IPR019775 -
Car07g02680 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 135 167 - -
Car07g02680 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 8 427 - -
Car07g02680 428 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Car07g02680 428 SMART c3hfinal6 15 38 IPR000571 GO:0046872
Car07g02680 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 176 IPR001680 GO:0005515
Car07g02680 428 Pfam WD domain, G-beta repeat 131 167 IPR001680 GO:0005515
Car07g02680 428 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Car07g02680 428 Pfam WD domain, G-beta repeat 295 329 IPR001680 GO:0005515
Car07g02680 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 299 IPR001680 GO:0005515
Car07g02680 428 Pfam CCCH-type zinc finger 102 121 IPR041367 -
Car07g02680 428 Gene3D - 17 124 - -
Car07g02680 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 329 IPR001680 GO:0005515
Car07g02680 428 PANTHER - 8 427 IPR044715 -
Car07g02680 428 MobiDBLite consensus disorder prediction 55 94 - -
Car07g02680 428 ProSiteProfiles Zinc finger C3H1-type profile. 13 39 IPR000571 GO:0046872
Car07g02680 428 MobiDBLite consensus disorder prediction 57 82 - -
Car07g02680 428 ProSiteProfiles Zinc finger C3H1-type profile. 97 124 IPR000571 GO:0046872
Car07g02680 428 Gene3D - 252 426 IPR015943 GO:0005515
Car07g02680 428 Gene3D - 125 251 IPR015943 GO:0005515
Car07g02680 428 SMART WD40_4 252 290 IPR001680 GO:0005515
Car07g02680 428 SMART WD40_4 128 167 IPR001680 GO:0005515
Car07g02680 428 SMART WD40_4 333 377 IPR001680 GO:0005515
Car07g02680 428 SMART WD40_4 207 244 IPR001680 GO:0005515
Car07g02680 428 SMART WD40_4 293 330 IPR001680 GO:0005515
Car07g02680 428 SUPERFAMILY CCCH zinc finger 99 122 IPR036855 GO:0046872
Car07g02680 428 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Car07g02680 428 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Car07g02680 428 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Car07g02680 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
Car07g02680 428 SUPERFAMILY WD40 repeat-like 132 419 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02680 Car-Chr7 51560184 51563788 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02680 132 335 Acyl Lipid Metabolism Gene Families AT3G18860 26.697 2.96e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car07g02680 WD40 0.00013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02680 - - gmx:100787799 588.956