Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02677 ATGGAGTCTTACGAGTTCCAGTCAGCGGAACTGAGGACATATGAAGGTCCAGTAGCTGGTGTCAAAGTTTTGGTTGTGGATGCTAACTCGGCATGCCGAGCAATTGTATCAAAAATGCTTCTTTCTATTGGATATGAGGTTATGACTGCTACACTAGCTTCCGAAGCATTATCCATTATCAGGGATAAGAAGAATGAGGTTAACCTTGTGCTTGTGGAGGCTCAGTTGCCAGACATGGAAATATATGATCTCACAGAGAAAATGAGAGAAATCTCTGATGTTCCATCTTTCATTATAACTTCTTATGATGATGACATTCCTTCCATATCAAGAGCTCTATCTACAGGAGCTAAATTGTGTTATAGAAAACCAGTTAAGTTTTCCGATCTACAGGGCCTTTGGCGATTTGCAGTGTGGAACAGATATGAACCAATATTCATGGAAGAAGTACCTGGATTTTGGTGGTATTCGTCAGAGGTAACTATGGCCAACAATGGTCTCGAATGCCGATCGTCCATGCATATAGGAGAGTCGTCTCTCCATAATGCAAATTGTAAAGAACAAGAATTTCTCGATAAAGATAACTCAGCTCTCTCGAAAAGGAAAAGGCGTACCTGGACTGATGATTTACATAGGAAGTTCTTGGAAGCTGTTGAAATAGCAGGAATCAATGCTCGTCCGAAGAAAATATTCCAGCTTATGGATGTGGAAGGACTTACAAAAGAGAGCGTTTCGAACTATTTACAGAAATATCGTCAATCTATGAAACTGCGAGCTAATGCAATGGAACAGCATATGAATGGATATGTGTCTCTGACTAAAAATAGTCGAGGAAAACGCCCTCTTTTCTCTGAGCAGCAAGGTGTGACCGACAACCCAGCTATCAGTCCGAAGGATCTCAGTAATTGCATGCATGTACAAGTTCTTGATACTTCTGCATATTTTTCTTCCCTGGAAAGCTCGAGCAGTCAGGAGCCACCTTTCGGGCAAAATCCACCGTGTCTGTCATTGGAAAAGCTAGGACAAGAATTGGATTTGTCAACACTGCTAGCCTTTGACACGCGTGAAAATTTTTTCCCCTCACTTCCAATTGCTCTACTACCACCACTAAATGAAAAAGATATTGAAATTTATGGGGGGGAAGGAAAGATTTATGAAATTTTTTATGCAAAAGGAGCTCAACAGTTTACTGATGAGGATTTAAATATGTGGTTGTCAACAATTCCAGACAATCTGAATAAtgatgctaatgctgaagctgttgctgatgcttga 1275 0.3945 MESYEFQSAELRTYEGPVAGVKVLVVDANSACRAIVSKMLLSIGYEVMTATLASEALSIIRDKKNEVNLVLVEAQLPDMEIYDLTEKMREISDVPSFIITSYDDDIPSISRALSTGAKLCYRKPVKFSDLQGLWRFAVWNRYEPIFMEEVPGFWWYSSEVTMANNGLECRSSMHIGESSLHNANCKEQEFLDKDNSALSKRKRRTWTDDLHRKFLEAVEIAGINARPKKIFQLMDVEGLTKESVSNYLQKYRQSMKLRANAMEQHMNGYVSLTKNSRGKRPLFSEQQGVTDNPAISPKDLSNCMHVQVLDTSAYFSSLESSSSQEPPFGQNPPCLSLEKLGQELDLSTLLAFDTRENFFPSLPIALLPPLNEKDIEIYGGEGKIYEIFYAKGAQQFTDEDLNMWLSTIPDNLNNDANAEAVADA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02677 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 256 IPR017930 -
Car07g02677 424 Pfam Myb-like DNA-binding domain 203 252 IPR001005 -
Car07g02677 424 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Car07g02677 424 SUPERFAMILY CheY-like 20 138 IPR011006 -
Car07g02677 424 Gene3D - 20 143 - -
Car07g02677 424 Gene3D - 197 257 - -
Car07g02677 424 SUPERFAMILY Homeodomain-like 199 256 IPR009057 -
Car07g02677 424 SMART REC_2 21 134 IPR001789 GO:0000160
Car07g02677 424 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 404 IPR045279 GO:0009736
Car07g02677 424 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR8-RELATED 20 404 - -
Car07g02677 424 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 253 IPR006447 GO:0003677
Car07g02677 424 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Car07g02677 424 CDD REC_typeB_ARR-like 23 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02677 Car-Chr7 51537864 51540481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02677 20 256 Response Regulator Gene Family AT2G25180 30.677 4.75e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car07g02677 Response_reg 1.2e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02677 - - mtr:MTR_8g032710 448.743