Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02669 ATGGATATGAAGGTGGCAAGGAGTAGTAGAACTGATCGAGTCATTGGAAAAACATGCTTCTATTGGCTTGCTGGGAGATGCAACAGAAACCCTTGTAGGTTTCGGCACAGCGAAACACCTTTGCCTTCTACAACAGCTTCTCACAGTGTCGATACTGGATACTGTAATGCAAGGAAGCGCCATTTCTTATCCGAGTCTGAGAATGACCCTCATGATCATAACAAAAAGGCAGTCTTGAAGAGAGTCAGTGGAGAAGGCAGAGATAAGACTCAAATTGTTGATGCTTCTCGGACTCTGTCACCAAGTATATGCAAATACTGGATCAATAGCAACTGCGTGCATGGTGATCAGTGTCGGAATATACATTCATGGTTTTCTGGCGATTGGTTGTCCAGATTAGCAAAGCTTCAAGGACACAAGAAGGTTGTTTCTGGAATTACACATCCAGTTGGATCAAACAAGCTTTATTCTGGAAGTACCGATGGGACACTTCGGACATGGGACTGCAATACTGGTCAATGTGATAATGTGATGAATCTTGGTGCTGAAGTCACATCTTTGATCAGTGAGGGCCCTTGGATTTTTGTTGGTCTGCCAAATATTGTCAAGGCATGGAATATTCAGACTGCATCACAGTTTAATCTTGATGGACCTAAGGGTCGAGTCCTTGCCATGGTTGTTGGCAATGATACACTATTAGCTGGAGCAGAGGATGGCATAATTTCTGCATGGAGAGGCAACTCTGAACCCGGTTCTCCTTTTGAACTGGTTATGTCATTATTGGGTCACACTAAATCTGTGGTTTGCCTTACCATTGGACGCCACAAGATGCTTTACTCAGGATCAATGGACCAAACCATTAAGGTTTGGGATCTTGACACATTCGAGTGTACAATGACACTCAATGGACATACTAATGTTATTACATCCCTTATTTGTTGGGACAATTACTTGTTATCTAGTTCATTAGACCATACTATTAAGATCTGGGCTGCCACTGAAGAGGGACCTTTGAAAGTGACATATTCACATAGTGTAGAAAATGGTGTTGTTGCACTTAGTGGGATGACTGATGCAGAAGGCAAGCATATATTGTTATGCTCCCGCAGAGACAATTCTGTTTGCCTGTATGAATTACCATCATTTTCTGAGAGGGGTAGATTGTTTGCTAGACGAGAAATTGGATCGATAGAGATCGGTTCTGGTGGACTCTTCTTCACCGGAGATGGTACTGGCTTGATGACTGTCTGGAAATGGTTGGAAGAGCCCAAGTTAGCAACATCCTCCTAA 1290 0.4302 MDMKVARSSRTDRVIGKTCFYWLAGRCNRNPCRFRHSETPLPSTTASHSVDTGYCNARKRHFLSESENDPHDHNKKAVLKRVSGEGRDKTQIVDASRTLSPSICKYWINSNCVHGDQCRNIHSWFSGDWLSRLAKLQGHKKVVSGITHPVGSNKLYSGSTDGTLRTWDCNTGQCDNVMNLGAEVTSLISEGPWIFVGLPNIVKAWNIQTASQFNLDGPKGRVLAMVVGNDTLLAGAEDGIISAWRGNSEPGSPFELVMSLLGHTKSVVCLTIGRHKMLYSGSMDQTIKVWDLDTFECTMTLNGHTNVITSLICWDNYLLSSSLDHTIKIWAATEEGPLKVTYSHSVENGVVALSGMTDAEGKHILLCSRRDNSVCLYELPSFSERGRLFARREIGSIEIGSGGLFFTGDGTGLMTVWKWLEEPKLATSS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02669 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 168 - -
Car07g02669 429 Gene3D - 252 428 IPR015943 GO:0005515
Car07g02669 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 300 IPR001680 GO:0005515
Car07g02669 429 SUPERFAMILY WD40 repeat-like 133 427 IPR036322 GO:0005515
Car07g02669 429 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Car07g02669 429 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Car07g02669 429 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Car07g02669 429 PANTHER - 9 429 IPR044715 -
Car07g02669 429 ProSiteProfiles Zinc finger C3H1-type profile. 18 39 IPR000571 GO:0046872
Car07g02669 429 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Car07g02669 429 Gene3D - 15 121 - -
Car07g02669 429 Pfam WD domain, G-beta repeat 255 291 IPR001680 GO:0005515
Car07g02669 429 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Car07g02669 429 Pfam WD domain, G-beta repeat 133 168 IPR001680 GO:0005515
Car07g02669 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 294 - -
Car07g02669 429 SMART c3hfinal6 13 38 IPR000571 GO:0046872
Car07g02669 429 SMART c3hfinal6 100 124 IPR000571 GO:0046872
Car07g02669 429 SMART WD40_4 126 168 IPR001680 GO:0005515
Car07g02669 429 SMART WD40_4 294 331 IPR001680 GO:0005515
Car07g02669 429 SMART WD40_4 208 245 IPR001680 GO:0005515
Car07g02669 429 SMART WD40_4 253 291 IPR001680 GO:0005515
Car07g02669 429 SMART WD40_4 372 418 IPR001680 GO:0005515
Car07g02669 429 Gene3D - 122 251 IPR015943 GO:0005515
Car07g02669 429 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 429 - -
Car07g02669 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 177 IPR001680 GO:0005515
Car07g02669 429 SUPERFAMILY CCCH zinc finger 101 123 IPR036855 GO:0046872
Car07g02669 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 330 IPR001680 GO:0005515
Car07g02669 429 ProSiteProfiles Zinc finger C3H1-type profile. 98 125 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02669 Car-Chr7 51376522 51379616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02669 124 327 Eukaryotic Initiation Factors Gene Family AT2G46290 25.446 3.90e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02669 - - gmx:100787799 568.155