Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02660 ATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCAACAAGTAGACAAGTAACATTCTCAAAGAGAAGAAATGGTTTGTTGAAGAAGGCTTTTGAGTTATCAGTTTTGTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCTCCAAGAGGGAAACTTTATGAATTTGCAAGCTCTAGCATAACAGGATCAATTGAACGTTACCGCAGTCATACCAGGACTAATAATACTTCAACACCTGCATCAGTGGATCAAAATACTCAGGCTCAATTGAAGGAAGAATCCCAACACATGATGAAGAAGATTGACCTTCTTGAGGCTTCAAAACGGAAACTCTTAGGACAAGGTTTAGGGTCTTGTTCCCTTGATGAACTACAAAAGATAGAGCAACAATTGGAGAGAAGTATAAGCAGTATTCGAACAAAAAAGAATCAGATTTTCAGGGAACAAATTGAGCAGCTAAAAGAAAAAGAAAAAACCCTAATTGCTGAGAATATCAGGCTCTCTGAAAAGTATGATAAGTTTTCCCAACCAGCAAAAAAGGATGAAAGAGAAAATTTACACGAACCCTTTGCAGAAAGTAGTCCAAGATCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGAACATGGCGCATTTCTCCAAAGATTTAG 666 0.3784 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASSSITGSIERYRSHTRTNNTSTPASVDQNTQAQLKEESQHMMKKIDLLEASKRKLLGQGLGSCSLDELQKIEQQLERSISSIRTKKNQIFREQIEQLKEKEKTLIAENIRLSEKYDKFSQPAKKDERENLHEPFAESSPRSDVETELFIGLPETRTWRISPKI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02660 221 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Car07g02660 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car07g02660 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car07g02660 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car07g02660 221 MobiDBLite consensus disorder prediction 175 203 - -
Car07g02660 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g02660 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car07g02660 221 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g02660 221 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g02660 221 Gene3D - 14 112 IPR036879 GO:0003677|GO:0046983
Car07g02660 221 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Car07g02660 221 Coils Coil 123 172 - -
Car07g02660 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car07g02660 221 PANTHER MADS BOX PROTEIN 1 211 - -
Car07g02660 221 MobiDBLite consensus disorder prediction 175 197 - -
Car07g02660 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car07g02660 221 PANTHER MADS-BOX PROTEIN SOC1 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02660 Car-Chr7 51109527 51126477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02660 1 160 MADS-box Gene Family AT2G45660 70.000 2.91e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car07g02660 K-box 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02660 - - mtr:MTR_8g033220 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02660 07 51109527 51126477 Car07g02660 07 51109527 51126477 ECH