Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02659 atgggaagagggagagttgagttgaagagaatagagaacaaaataaaccggcaggttactttctctaaaagaaggaatggtttgctcaagaaagcttatgaactctctgttctctgtgatgctgaagttgcacttatcattttctctagccgtggaaaactctatgaattTGGAAGTGTTGGCACTACCAAAACTATCGAACGATATCAAAGGTGCTCTTTTAATCCTCAACCAGATGACCACCAAATCGATTGTGAAACACAGAGTTGGTACCAAGAGGTGTCTAAGTTGAAGGCAAAGTATGAATCTCTTCAAAGGACTCAGAGGCATTTGCTTGGGGAAGATCTTGGACCTTTGAACATAAAGGAGCTTCAGAGTCTTGAGAAACAACTTGAAGGTGCTTTAGCACAAGCTAGACAAAGAAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAAAAGGGAACGCCATCTAGGAGATATGAACAAGCAACTAAGACTCAAGCTTGAAGGAGAAGGATTTAATCTTAAAGCTATGGAATGGAGCTCTACTTCAGCTGCTGGAAATACCAACTTTACATTTCAGCAACCTCAAACCAACCCTATGGATATGCAAGCAGAACCATTTTTGCAAATAGGATACCAACAGTACGTtcaagctgaggcatcaaatatttcgaagagcatggcttgtgaaactaacttcatgcaaggatggatgctttga 732 0.2719 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQPDDHQIDCETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQSLEKQLEGALAQARQRKTQIMIEQMEELRKRERHLGDMNKQLRLKLEGEGFNLKAMEWSSTSAAGNTNFTFQQPQTNPMDMQAEPFLQIGYQQYVQAEASNISKSMACETNFMQGWML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02659 243 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g02659 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Car07g02659 243 PANTHER MADS BOX PROTEIN 1 229 - -
Car07g02659 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g02659 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g02659 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car07g02659 243 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Car07g02659 243 Coils Coil 121 144 - -
Car07g02659 243 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Car07g02659 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car07g02659 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car07g02659 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car07g02659 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car07g02659 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car07g02659 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02659 Car-Chr7 51096908 51103782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02659 1 243 MADS-box Gene Family AT2G45650 65.613 3.96e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car07g02659 K-box 8.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02659 K09264 - gmx:100820061 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02659 07 51096908 51103782 Car07g02659 07 51096908 51103782 ECH
Car07g02659 07 51096908 51103782 Car03g01481 03 60324628 60331143 ECH
Car07g01179 07 10568079 10576899 Car07g02659 07 51096908 51103782 ECH