Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02580 ATGTATCATGCTCCATTGTATCACCTCAATGCAATTCAGGTTTTGAAAGCCAAAGCTCCCAACATTCCAAGGAAAACCTGTGACAGCATGCCAGAGAAACCTGAAAGTGATGATTTTGGAGTAAAGCATAGAGAAGAGGTTCAGTTGCCATCTTCCATTTACTCTCATCATCAGCCTTGGTGGCTTGGAGTAGGGGAAATTGAAAATGCCTCCAAATCATCTTCAGCTGATCAGCTAACTCGTTCAATCATGAATGGTGTCACATATTCAGAGGCTAATGGAGTTGATATCAATAAACAAAGGCATCCTTTGGTTTCTCCTTCACTTTCTGTAACTGATAAGTCAGGTGGGGATGTTGCTAAGGAGCACCGAAACATCAAACATGCCCTGTCGTCAACCGCATTTACCCTGGACAAATGCCTGAATCCAAATTTGCAGACAGAACTTGATGGTCATTCAATTGTTTTAACATCCCCTCATTCAAATGCACAGTTTGGTCAAATCTTGACTACTTATGGACAACAATCTATGATGAACCCTCAGAAGCTATACAGAATGCATCATCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTCTATGTCAATGCAAAACAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCCGAGCTCGAAAAGAAAGCGATTAAAGTTAGAAAGCCATATCTTCACGAGTCGCGTCACCTACACGCTTTGAGAAGGGCGAGAGGCAACGGTGGTCGCTTTCTCAATACGAAAAAGCTCGAACATAACAATTCTAATGTTACTTTTGATAAAGGAAACAATGAGAAACAAGGGTCGTCAAATGCATCACAGTCCATGCACAAAATGCAGGGTTTCAACATTTGTTACCATGATGGTAATGGCTTTACAACACTATGCCATTCACAGGCAAATGGAAAACAGGAGGGTGACTTCTTTGGTCAAGAAAGAAGCCCAAATGGTGCTATTAAATGA 999 0.4164 MYHAPLYHLNAIQVLKAKAPNIPRKTCDSMPEKPESDDFGVKHREEVQLPSSIYSHHQPWWLGVGEIENASKSSSADQLTRSIMNGVTYSEANGVDINKQRHPLVSPSLSVTDKSGGDVAKEHRNIKHALSSTAFTLDKCLNPNLQTELDGHSIVLTSPHSNAQFGQILTTYGQQSMMNPQKLYRMHHHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEHNNSNVTFDKGNNEKQGSSNASQSMHKMQGFNICYHDGNGFTTLCHSQANGKQEGDFFGQERSPNGAIK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02580 332 MobiDBLite consensus disorder prediction 264 287 - -
Car07g02580 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 62 296 IPR001289 GO:0003700|GO:0006355
Car07g02580 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 201 256 IPR001289 GO:0003700|GO:0006355
Car07g02580 332 PRINTS CCAAT-binding transcription factor subunit B signature 202 224 IPR001289 GO:0003700|GO:0006355
Car07g02580 332 PRINTS CCAAT-binding transcription factor subunit B signature 233 256 IPR001289 GO:0003700|GO:0006355
Car07g02580 332 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 62 296 - -
Car07g02580 332 ProSitePatterns NF-YA/HAP2 subunit signature. 204 224 IPR018362 GO:0003677|GO:0016602
Car07g02580 332 ProSiteProfiles NF-YA/HAP2 family profile. 199 259 IPR001289 GO:0003700|GO:0006355
Car07g02580 332 Gene3D - 199 260 - -
Car07g02580 332 SMART cbf3 198 259 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02580 Car-Chr7 49264951 49272017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02580 148 286 CCAAT-HAP2 Transcription Factor Family AT5G12840 47.143 8.11e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car07g02580 CBFB_NFYA 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02580 K08064 - gmx:100782085 385.956