Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02575 ATGGAGTCATCTGTTGATTTACCAGCTAAACGCACCGCTCCAACTGGAATTTCTCCAGAAGGGGGGCACAAAAAACATAAATTATCAAGTGATAGCTTACCATATGCAGCAAATGGTAATGCGATAGATTACAAAAATCCTTATGCAATCTCAGATGTTGTAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTGACAAAGGATATAGAGGCCCTTATAACCCGGAAAATGCAAATATTGGGCCCTTACTTTGCAAAATATCCTAGACTTGTTAATCAGTTATTGAAAGTGGTGATGAATCACGACGAAGTAACTGAAAAATCAGAAAATAAAAAAGTTACTGTTTTGCCACATCATAATGTCATAGATTTGGATGGGGGGCACATTGAAAAGGATGTTCCTGCGACACCATTTCCTGTTGTAATAATTGATTCAGATGAGGAAGATGATAGGGATCAAAAGTCTTTTGTTCCGTTTTATGAAGTTTTATTGCCAAAACCAGTTCAGTCTCCTGCATTAAAAAGGATTGGGTATCATGCTTCCAATGCTTCCCATGAAAGTGGAGATCTAAAATTTGAAACAAGTCTGCCTTGTAAAGATGACACCAAGAAAGATAAAGGTGTCTATGTTGGTGTACATGAGGAAGAAGATCACGAGGTTGATGCTGTAGACGATGGGCTAGATGATATCTGGAGGGAGATGTCGATGGCCATAGAAACTTCTAAAGACGTTTCTGACGATCCTCCTCCTgaagaagaagaggaagaagaTGCTGACTGTGATCATTCTTTTGTTTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACTATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATGTGTCTGATTCTTCAAATGGCAAAGAAAAAGTTGATGTATTTGGTGTTAAGATTGCTGACGATGATCTCATAGTAACCGAAATATCAGCACATCCTCGGCATGCAAATCAAATGAAACCACACCAAATAGAAGGATTCAATTTTCTTGTAAGAAATCTGGCGGGGGACAATCCTGGGGGATGTATCCTGGCTCATGCTCCAGGATCTGGAAAGACATTCATGATTATCAGTTTCATGCAAAGTTTTTTAGGAAAGTATCCCAGTGCCCGACCTTTGGTTGTGCTTCCTAAGGGAATACTATCAACATGGAAAAAAGAGTTTCAAACATGGCAAGTTGAAGATATACCACTTTATGACTTTTACACCGTGAAGGCTGACAACAGATATCAGCAATTGGAAGTTTTGAAACAGTGGGTGGCTAACAAGAGTATCCTTTTCTTAGGATACAAACAGTTTTCTTCCATTGTCTGTGATAATTCTAACAACAACGCATCGATATCTTGTCAAGAGATATTGCTTAAGGTTCCTTCAATTCTCATTTTAGATGAGGGACACACTCCTCGGAATGAAAATACTGATATGGTACAGTCCCTTGCAAAAGTACAAACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAAAATCATGTCAAGGAGGTATTTAACGTTCTCAATCTTGTCCGACCAAAGTTTTTACAGATGGAAACGTCCAAGCCTATTGTCCGACGCATTAAGAGTAGGATCTATATACAAGGTGTGAAAGCCTTCTCCGAGTTGGTCGAAAATACATTGCAGAAGGATCCAGATTTTAAAAGGAAAGTAGCTGTTATACATGATTTGCGTGAGATGACCAGCAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCCGGCCTCGTAGATTTTACTGTGATTCTCAAACTCACTCCTCGACAAAAGCATGAAGTTGAGAAAGTTAAGAGGATATCTAGAAAGTTCAAGATGTCTTCTGTAGGTACTGCAGTATATCTGCACCCAAAATTGAAACCTGTTGCAGAAAAATGTGATGAAAAGTCTATATCAGATCATGTAATGGATGATCTAATAGAGAATATAGATGTAAGAGATGGGGTGAAATCAAAATTCTTTCGCAACATGCTGAACCTATGCGAATCAGCTGGAGAGAAGCTCCTTGTGTTCAGTCAATATCTCTTACCTTTAAAATATATGGAAAGGATAACTATGAAATGGAAGGGTTGGAGTCTCGGAAAAGAAATCTTTGTAATTTCAGGAGAAACATCATCTGAAGACAGAGAGTTGTCCATGGAAAAGTTTAACAATTCACCTGATGCAAGAATATTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCCTTGGTTGGCGCATCTCGCGTCATCATCTTGGATGTTCATCTGAACCCCTCAGTTACTCGTCAAGCTATTGGCCGTGCTTTTCGGCCAGGACAGACAAAGAAAGTGTTTGTGTATCGATTGATAGCTGCTGATTCTCCGGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGCGAAAGTGCTTTCGAAGTTGAGACACTCGATGTTAAAGAATGCGGTGATCTATTTCTTGAAAGTCCATTGTTAGGCGAAGATGTAAAAGCTCTGTATAAAAGGTAG 2613 0.3838 MESSVDLPAKRTAPTGISPEGGHKKHKLSSDSLPYAANGNAIDYKNPYAISDVVNRLESGKFGSVTKDIEALITRKMQILGPYFAKYPRLVNQLLKVVMNHDEVTEKSENKKVTVLPHHNVIDLDGGHIEKDVPATPFPVVIIDSDEEDDRDQKSFVPFYEVLLPKPVQSPALKRIGYHASNASHESGDLKFETSLPCKDDTKKDKGVYVGVHEEEDHEVDAVDDGLDDIWREMSMAIETSKDVSDDPPPEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYVSDSSNGKEKVDVFGVKIADDDLIVTEISAHPRHANQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPSARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADNRYQQLEVLKQWVANKSILFLGYKQFSSIVCDNSNNNASISCQEILLKVPSILILDEGHTPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLQMETSKPIVRRIKSRIYIQGVKAFSELVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVILKLTPRQKHEVEKVKRISRKFKMSSVGTAVYLHPKLKPVAEKCDEKSISDHVMDDLIENIDVRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYMERITMKWKGWSLGKEIFVISGETSSEDRELSMEKFNNSPDARIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEEDHNTCFKKELISKMWFEWNEYCGESAFEVETLDVKECGDLFLESPLLGEDVKALYKR 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02575 870 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 848 IPR001650 -
Car07g02575 870 Pfam SNF2-related domain 359 617 IPR000330 GO:0005524|GO:0140658
Car07g02575 870 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 22 870 IPR044567 GO:0080188
Car07g02575 870 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 353 532 IPR014001 -
Car07g02575 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 833 IPR027417 -
Car07g02575 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 552 IPR027417 -
Car07g02575 870 Pfam Helicase conserved C-terminal domain 685 793 IPR001650 -
Car07g02575 870 Gene3D - 602 858 IPR027417 -
Car07g02575 870 MobiDBLite consensus disorder prediction 240 259 - -
Car07g02575 870 CDD SF2_C_SNF 677 805 - -
Car07g02575 870 PANTHER PROTEIN CHROMATIN REMODELING 35 22 870 - -
Car07g02575 870 SMART ultradead3 335 545 IPR014001 -
Car07g02575 870 MobiDBLite consensus disorder prediction 1 32 - -
Car07g02575 870 Gene3D - 309 567 IPR038718 -
Car07g02575 870 SMART helicmild6 709 794 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02575 Car-Chr7 49167903 49174705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02575 691 822 RAD5 or RAD16-like Gene Family AT5G43530 35.606 5.40e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car07g02575 SNF2_N 2.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02575 K10875 - gmx:100780454 1362.82