Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02547 ATGGCATTGAGTAATCCACTCTTCTATGATATACGGAGCAGCAATGATGTTGATCCTCCTCAAAACGAAGAATCAACCGATGTTGGTGAATTGGTGAACGATCCTGCACAAACTGCCTCTAAACCTATTGGGACTGTTTTAAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTATGCCTAAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGATGCAAACCCAGGGTACATAACCGGTGTCCTACGTGTAGGCATGAGCTGGGAAATATTAGATGCTTAGCACTGGAGAAGGTGGCTGCATCTTTTGCACTCCCCTGTAAATATAAAGGTTTTGGGTGCATCGGTATATATCCATACTACAATAAGCCAGAACATGAATCTCAATGTGCATATAGACCCTATAACTGTCCATATGCTGGTTCAGAATGCTCTGTTGTCGGTGATATACCCTACCTGGTGACCCATCTGAAAGATGAGCACAAAGTGGACATGCACAACGGTAGCACTTTTAACCATCGTTATGTCAAATCAAATCCTCAAGAAGTTGAAAATGCCACATGGATGCTAACGGTATTCAGCTGCTTTGGTCAATACTTTTGTCTGCATTTTGAAGCCTTTCAGCTTGGAATGGCTCCTGTCTACGTAGCCTTTTTGCGGTTTATGGGTGATGATAGTGAGGCGAAAAATTACACCTACAGTCTAGAGGTAGGTGGAAATGGGAGGAAGATGGTTTGGCAGGGAGTTCCCAGAAGCATCCGAGAAAGCCACCGTAGGGTTCGCGATAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCACTCTTCTTTTCAGGTGGTGACCGAAAGGAGTTGAAGCTAAGGATTACTGGTAGGATTTGGAAAGAACAATGA 915 0.4393 MALSNPLFYDIRSSNDVDPPQNEESTDVGELVNDPAQTASKPIGTVLSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASFALPCKYKGFGCIGIYPYYNKPEHESQCAYRPYNCPYAGSECSVVGDIPYLVTHLKDEHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYVAFLRFMGDDSEAKNYTYSLEVGGNGRKMVWQGVPRSIRESHRRVRDSFDGLIIQRNMALFFSGGDRKELKLRITGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02547 304 MobiDBLite consensus disorder prediction 1 35 - -
Car07g02547 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 163 IPR013083 -
Car07g02547 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 108 IPR013083 -
Car07g02547 304 SUPERFAMILY RING/U-box 42 95 - -
Car07g02547 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 10 304 - -
Car07g02547 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 10 304 - -
Car07g02547 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car07g02547 304 CDD RING-HC_SIAHs 54 92 - -
Car07g02547 304 SUPERFAMILY TRAF domain-like 112 301 - -
Car07g02547 304 MobiDBLite consensus disorder prediction 8 35 - -
Car07g02547 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 297 IPR008974 GO:0005515
Car07g02547 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Car07g02547 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Car07g02547 304 CDD Sina 170 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02547 Car-Chr7 48404946 48409623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02547 30 304 C3H Transcription Factor Family AT2G41980 71.841 3.55e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02547 K04506 - gmx:100793457 597.43