Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02399 ATGTCTCATTCTTTGCTTCCTTTAGCCTTTTTTGTGATCCTACTCGTACAGGTCGTGGTTGCCGTTGACCCAAATTGGTATGATGCTCGTGCAACCTTCTATGGTGACGAGGGAGGTGCTGAAACCATGCAGGGGGCTTGTGGTTATGGTGATCTATTCAAACAAGGATATGGACTTGCAACTACAGCACTAAGCACAGCTCTATTCCATAATGGAGCTACTTGTGGTGCATGTTTTGAGATCATATGCGTCAATGATCCACAATGGTGCATAGAGGGTGCAGGCTCAATCATAGTAACCGCAACAAATTTTTGTCCTCCAAATTACACCAAGCCTAAAGAAATTTGGTGTAATCCTCCACAAAAACACTTTGACTTATCATACAAAATGTTTACCACTATTGCAAAATATGAAGCTGGTGTCATCCCCGTTAAATATAGACGTGTTCCATGCATCAAAAGTGGGGGGGTTAGATTTGAGCTAAATGGAAACCCTTATTTTGTAATTGTTTTAGTGTATAATGTTGCTAATGCTGGTGATGTTACTCGTATGAGTGTTAAAGGTTCTAACACTGGATGGATTCCCATGTCACGCAATTGGGGACAAAATTGGAACCTTGGAAGTAATTTGGTTGGACAAGCATTGTCATTTTGGGTTACTACAAGTGATGGAAAAGCTTTGGAGTTTAGTTCGGTTGCTCCTTCCAATTGGCAATTTGGTCAAACCTATGAGGGCAATGGAAATTTTTTATGA 753 0.4077 MSHSLLPLAFFVILLVQVVVAVDPNWYDARATFYGDEGGAETMQGACGYGDLFKQGYGLATTALSTALFHNGATCGACFEIICVNDPQWCIEGAGSIIVTATNFCPPNYTKPKEIWCNPPQKHFDLSYKMFTTIAKYEAGVIPVKYRRVPCIKSGGVRFELNGNPYFVIVLVYNVANAGDVTRMSVKGSNTGWIPMSRNWGQNWNLGSNLVGQALSFWVTTSDGKALEFSSVAPSNWQFGQTYEGNGNFL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02399 250 Pfam Lytic transglycolase 61 146 IPR009009 -
Car07g02399 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Car07g02399 250 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Car07g02399 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Car07g02399 250 Gene3D - 15 151 IPR036908 -
Car07g02399 250 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Car07g02399 250 PANTHER EXPANSIN-A15 8 249 IPR002963 GO:0009664
Car07g02399 250 Gene3D - 156 250 IPR036749 -
Car07g02399 250 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Car07g02399 250 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Car07g02399 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Car07g02399 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Car07g02399 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Car07g02399 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Car07g02399 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Car07g02399 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Car07g02399 250 PANTHER EXPANSIN-A21-RELATED 8 249 - -
Car07g02399 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Car07g02399 250 SMART dpbb_1 61 146 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02399 Car-Chr7 43856747 43858405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02399 21 249 Expansin Gene Family AT5G39280 65.502 1.39e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02399 - - cam:101510232 382.104