Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02374 ATGGGTCGTCGCAAAATTGACATTGTGAAGGTGAAAGATCCAAACACAATGCAAGTCACATTTTCGAAACGTAGATCAGGCTTATTCAAGAAAGCAAATGAATTAGCCATTTTGTGTGGTGTTGAAGTTGCTATTGTTGTATTCTCTCCGGGTAATAAGCCTTACTCTTTTGGGCACCCGAGTGTTGATGCTATTGCAATCAAGTTTCTTCAAGATGAGCCCATACCAAATGATGTTATTGGAAACTCTTCTTCTGAATTTCCCAACATAGAGAATTTGAATCAACAACTTAATGATGTGCTTGCCCAACTACAAGAGGCTCAAAAGGAATCTAAAGTGCTTGATGAGGTCCTCAAAGAATACAAAGCAACTGAACTCTCTCAACTAAAAGAATTAAAAAATTCATTTATTGAGCTTCAAGATATGGTCAAAACACGTCTTTCTGATATAGATATATCAGAATGTATGATCCTTCTTGCACAGAAACCAGTGGTTGGAATTAATAAGAAAGTCACAAAAAGGAAAAGAAGAAATTAA 537 0.3594 MGRRKIDIVKVKDPNTMQVTFSKRRSGLFKKANELAILCGVEVAIVVFSPGNKPYSFGHPSVDAIAIKFLQDEPIPNDVIGNSSSEFPNIENLNQQLNDVLAQLQEAQKESKVLDEVLKEYKATELSQLKELKNSFIELQDMVKTRLSDIDISECMILLAQKPVVGINKKVTKRKRRN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02374 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car07g02374 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car07g02374 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car07g02374 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Car07g02374 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 171 - -
Car07g02374 178 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Car07g02374 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g02374 178 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Car07g02374 178 PANTHER MADS BOX PROTEIN 2 171 - -
Car07g02374 178 Coils Coil 87 124 - -
Car07g02374 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02374 Car-Chr7 42509177 42509897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02374 1 162 Type I MADS-box Gene Family AT2G34440 40.462 3.10e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car07g02374 SRF-TF 5.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02374 - - mtr:MTR_4g131030 216.083