Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02361 ATGGAAAATCGCATCTACTCTTCTTACAGCCCTACCAACTACAGAGTGGGTGGAGCAACATCAACCTCCCCGACCCGATACTACGACCCGGATAGCATGTTCCTTTCTCACTATcgccgcaccgctgaagccgccgccgctgcctccgctcaccgcTACTCATCTATCTCCGACATCGACATTGCTCCGCCTGGTGTTGCTTCTAGAATCTCCTCTTCCTCAACCGCTAACTACCTATCTCAAACTTCCCCTTGGTCTTCCGCCTTCCCCGCCGCAAATGCCGGCTCTCTTTCGCTTGACCTCAATCGCTCTACCGACGCGCTCTACCATCCAACCATTTTGAGTACAATTGGGCAAAACGAAGCTTGGTATACTACAAACTCACTGACCAAGCGCCCTAGATACGAAACTGGAAGCACTTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTTCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAATTCTTCCCGAGAGACCAGGAGAACCAGATTGTCCGTACTTTCTGAAAACTAAAAAATGCAAGTTTGGTTCACGGTGCAAATTTAATCATCCAAATGTTCCCTCTGAAAATGCTGATGTTTCTGGCTTACCCGAGAGGCCTCTAGAGACCCCTTGTGCGTTCTACTTGAAAACTGGATTATGTAAGTATGGTGCTGCGTGCAAATTCCATCACCCCAAAGATATCCAGATTCAGGTATCTGATGAATTGAGCCATACCGTTGAGCAAACTCAAACGAATTCTGTGTTGGACGGTGCAACAGGAGATTCACAACCAATTAATCCTCTTATACCTCCGCTGTTGCATAATAGCAAAGGGCTTCCTGTGAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTTGGTGCCACTTGCCGCTACAATCATCCTGCCATGAATGCAATTAATCCAACTATTTCTACATTGGCTCCTTCTGTTTTGGCATCTTCAGCAGCTAATCTTAACATTGGAGTTATTAATCCAGCTGCATGTCTTTATCAAGCTTTTGACCCCAGGCTGTCAAACCCAGTGTCTCAGGTGGGAACAACACAGACTGTCTTTCCTCAGCGCCCTGGACAGATTGAATGTGATTATTATATGAAAACTGGCATATGTAAATATGGGGAAAGATGCAAGTACCATCACCCACTCGACCGCGCAACACCATCAATGTCAAAACTGCAATCAACTGTTAAACTCACTCCTGCAGGATTACCAAGAAGAGAGAAGGGTGTTGAGATCTGCCCATACTATTTGAAAACTGGAACGTGCAAGTTTGGTGTAACCTGTAAGTTTGACCATCCACCACCAGGTGAAGTGATGGAGATGGCTAAGTCATCACAAGGAACTTCTACAAACAATGGAGGAGAAACAGATACTAATGAAAATGTGCTTGGTTCTGATCCAGAAGAAGATCATGCTTGA 1563 0.437 MENRIYSSYSPTNYRVGGATSTSPTRYYDPDSMFLSHYRRTAEAAAAASAHRYSSISDIDIAPPGVASRISSSSTANYLSQTSPWSSAFPAANAGSLSLDLNRSTDALYHPTILSTIGQNEAWYTTNSLTKRPRYETGSTLPIYPQRPGEKDCSHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPNIVPSEILPERPGEPDCPYFLKTKKCKFGSRCKFNHPNVPSENADVSGLPERPLETPCAFYLKTGLCKYGAACKFHHPKDIQIQVSDELSHTVEQTQTNSVLDGATGDSQPINPLIPPLLHNSKGLPVRLGEVDCPFYMKTGSCKFGATCRYNHPAMNAINPTISTLAPSVLASSAANLNIGVINPAACLYQAFDPRLSNPVSQVGTTQTVFPQRPGQIECDYYMKTGICKYGERCKYHHPLDRATPSMSKLQSTVKLTPAGLPRREKGVEICPYYLKTGTCKFGVTCKFDHPPPGEVMEMAKSSQGTSTNNGGETDTNENVLGSDPEEDHA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02361 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 457 482 IPR000571 GO:0046872
Car07g02361 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 406 429 IPR000571 GO:0046872
Car07g02361 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 173 IPR000571 GO:0046872
Car07g02361 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 244 267 IPR000571 GO:0046872
Car07g02361 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 343 IPR000571 GO:0046872
Car07g02361 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 201 225 IPR000571 GO:0046872
Car07g02361 520 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Car07g02361 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 70 494 - -
Car07g02361 520 MobiDBLite consensus disorder prediction 485 520 - -
Car07g02361 520 Gene3D - 239 355 - -
Car07g02361 520 Gene3D - 402 498 - -
Car07g02361 520 ProSiteProfiles Zinc finger C3H1-type profile. 455 483 IPR000571 GO:0046872
Car07g02361 520 MobiDBLite consensus disorder prediction 490 509 - -
Car07g02361 520 ProSiteProfiles Zinc finger C3H1-type profile. 403 431 IPR000571 GO:0046872
Car07g02361 520 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Car07g02361 520 SUPERFAMILY CCCH zinc finger 204 225 IPR036855 GO:0046872
Car07g02361 520 Gene3D - 191 234 - -
Car07g02361 520 Gene3D - 105 186 - -
Car07g02361 520 PANTHER CCCH ZINC FINGER/TIS11-RELATED 70 494 IPR045877 GO:0003729
Car07g02361 520 SUPERFAMILY CCCH zinc finger 407 432 IPR036855 GO:0046872
Car07g02361 520 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Car07g02361 520 SMART c3hfinal6 240 267 IPR000571 GO:0046872
Car07g02361 520 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Car07g02361 520 SMART c3hfinal6 403 430 IPR000571 GO:0046872
Car07g02361 520 SMART c3hfinal6 455 482 IPR000571 GO:0046872
Car07g02361 520 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Car07g02361 520 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
Car07g02361 520 SUPERFAMILY CCCH zinc finger 458 482 IPR036855 GO:0046872
Car07g02361 520 SUPERFAMILY CCCH zinc finger 244 268 IPR036855 GO:0046872
Car07g02361 520 SUPERFAMILY CCCH zinc finger 148 174 IPR036855 GO:0046872
Car07g02361 520 SUPERFAMILY CCCH zinc finger 321 344 IPR036855 GO:0046872
Car07g02361 520 ProSiteProfiles Zinc finger C3H1-type profile. 240 268 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02361 Car-Chr7 41802424 41809813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02361 194 480 C2H2 Transcription Factor Family AT5G18550 31.302 2.52e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car07g02361 zf-CCCH 9.7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02361 - - cam:101499264 1070.46