Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g02251 | ATGGAGTTCACCACAACAACCCTCAGCGACCTTCCTCCCAACAAGAGACTCAGACTTATTCAACAGAAAAATCAACAACACAGTCCCTGTTCTCCCTTACCCACCAAAAAACGCAAAGAATCTCGAAACTCAACACTTTTTCACAGCCCACCTTCAACACCATCACCATCTATTTATTCTCTACCCACCAAAAAAAGAGTATGCGCTCTTCATCCCCACCTTTACCATCACAACACACCAAACCATGCCGTTCAACCTTTCGACCTCAATGTCGAATACAACCCCACTCTCCACTCACCCACCCCTACTCACAGAAAACCTCAAATACAAGACACCAACAACATCGAAAATGAAGACGACAGCGACGATGGGATTTTATGCTGTGTGTGCCAGAGCACCGATGCTAACCCTGAGGACCCAATCGTTTTCTGCGACGGTTGCAATTTAATGGTCCACGCTTCCTGCTACGGAAACCCATTAACAAAAAATATCCCAGAGGGTGATTGGTTTTGTGAACGGTGTCGTTTTATCAACAAAAACGACACTGTTTCAATTAATTGCTCGTTGTGTCCAACAAAAGAGGGAGCAATGAAGCGAACAATAGATGGAACGTGGGCCCACATAGTTTGTGCTTTACTTGTTCCTGAAGTGTTTTTTGTTGATCCAGAAGGGAGAGAAGGGATTGATTGTTCTAAAGTTCCAAAGAAGAGATGGTTGGAGAAGTGCTATGTTTGTGAGTGTTGTGATGGGTGTGCCTTGGTTTGCTCCGAACCTAAGTGTGGTTTGGGTTTTCATATTACTTGTGGAATCAAAGAGGATCTTTGTATTGAGTATAAGGAAGCGAAAAAAGGTGCTACTGTTGTTGCTGGTTTTTGTAAAACCCACTCCCAACTATGGGAAAAGCAACAGGTATCTGGGAAATACAAGATTGTTGCAGTTGAAGATAAAAAGTAG | 954 | 0.4329 | MEFTTTTLSDLPPNKRLRLIQQKNQQHSPCSPLPTKKRKESRNSTLFHSPPSTPSPSIYSLPTKKRVCALHPHLYHHNTPNHAVQPFDLNVEYNPTLHSPTPTHRKPQIQDTNNIENEDDSDDGILCCVCQSTDANPEDPIVFCDGCNLMVHASCYGNPLTKNIPEGDWFCERCRFINKNDTVSINCSLCPTKEGAMKRTIDGTWAHIVCALLVPEVFFVDPEGREGIDCSKVPKKRWLEKCYVCECCDGCALVCSEPKCGLGFHITCGIKEDLCIEYKEAKKGATVVAGFCKTHSQLWEKQQVSGKYKIVAVEDKK | 317 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g02251 | 317 | SMART | PHD_3 | 126 | 175 | IPR001965 | - | |
| Car07g02251 | 317 | SMART | PHD_3 | 241 | 296 | IPR001965 | - | |
| Car07g02251 | 317 | SUPERFAMILY | FYVE/PHD zinc finger | 116 | 180 | IPR011011 | - | |
| Car07g02251 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 183 | IPR013083 | - | |
| Car07g02251 | 317 | MobiDBLite | consensus disorder prediction | 21 | 58 | - | - | |
| Car07g02251 | 317 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 114 | 313 | - | - | |
| Car07g02251 | 317 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 8 | 97 | - | - | |
| Car07g02251 | 317 | MobiDBLite | consensus disorder prediction | 99 | 118 | - | - | |
| Car07g02251 | 317 | PANTHER | PHD FINGER PROTEINS | 8 | 97 | - | - | |
| Car07g02251 | 317 | PANTHER | PHD FINGER PROTEINS | 114 | 313 | - | - | |
| Car07g02251 | 317 | ProSiteProfiles | Zinc finger PHD-type profile. | 124 | 177 | IPR019787 | - | |
| Car07g02251 | 317 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 184 | 296 | IPR034732 | - | |
| Car07g02251 | 317 | CDD | PHD_BRPF_JADE_like | 126 | 174 | - | - | |
| Car07g02251 | 317 | Pfam | PHD-zinc-finger like domain | 186 | 295 | - | - | |
| Car07g02251 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 298 | IPR013083 | - | |
| Car07g02251 | 317 | Pfam | PHD-finger | 127 | 175 | IPR019787 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car07g02251 | 21 | 317 | C2H2 Transcription Factor Family | AT3G14740 | 50.000 | 2.69e-104 | 307 |
Transcription factors information