Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02240 ATGTATGAAGTGATCTTAACCAGCTCCCCGGAGGGTCCAATAACAGCATTTGATGCTTCCACCGGCGCCACCGTTGCACAATTCACCGGCAGCCGGTCACCATGTCGCGGCCTCGCAGTGACAAGCAAGGGACTCATTGCAGCTGCCCATGTGTCCTCAGACTCAGGATCAGGCTCAATTCACATCTACAATTGGTTCACTTCATCAGTTTTCCACAACATCCCTCTTCCCGAACCCGTCGCTCCATTAGCCACCACCTCCACTGGCGACTTTCTCTTCGCAGGCGGGGTGTCGGGGAGTATACACTCTCTCTCACTCCCTTCTGGAGATATCATTAAATCATTCACTCCTCACTCAAAACCCGTTTCCACTCTCCACCTCAGTGATGATGGGTCGCTATTGTTTTCGGGTAATGATGATGGCACTATTGTTGTGATTCAATCTTTTAAGCTTGTAGATGATTCACCTTCGTGTAGTGACCCAATCATACACAAATGGAAGGCACATTCTGAATCAGTGACAAATTTCATCACTGGAGTTGGGATTTGTACTTGTACATTGGTTTCTTGCTCGATGGACTGCACGTGTAAGTTTTGGAGCTTAACAAACGGGATAATTCAAATGCGAACTGTGACATTCCCATGTGCAATTTTTGGGTTTGTTATGGATTCAACAGAGTCAGGGTTCTATGCTGCTGGTTCAGATGGGTTTATTTATAAAGGGTTAATTAAGGTAGGTAGTAGAAAAATGTTTGGAAAAGGAAAAGCTTATGAATTGGTTAATTGGGGTAAAACCAAAAGGCATGGTGGATCAATTGTGTCTTTGTTTTTGGTGAATGAAGGGAGAAATTTGGTGTCTGGTTCAGAAGATGGGAGTGTTTGGATGTGGGATGTTGAGGAAGGTGAAGTGATTATGGTGTTGGTGAATGATCAAATATTGGGAAGAACAAGAAGCATTAGTGATATGATAGTGGTGAAAGGGACTAATAATAATAATGGGTTTAGTGTTACAAGTGGTGAAGGTGGTAGGGGATTCAGTTCTACTGGATTATGTGATGAAGAGATGATTAGGACTTTGAAGCAAATTACAGAGGTTGGAAATTTGATGGATGTTGCAGTTCATGACAAGGGAAGAGCCATTGATATGCTTGAATCTACAATTGCAATGTATGAGAGGCTATTGAGGCTTATTCTTCGGGAAGCTACAAAAGCAATTGAAGAGACAGACGGAGATGAAGACAAGGATAACAAAGGGAAGAAAGATTAG 1266 0.4305 MYEVILTSSPEGPITAFDASTGATVAQFTGSRSPCRGLAVTSKGLIAAAHVSSDSGSGSIHIYNWFTSSVFHNIPLPEPVAPLATTSTGDFLFAGGVSGSIHSLSLPSGDIIKSFTPHSKPVSTLHLSDDGSLLFSGNDDGTIVVIQSFKLVDDSPSCSDPIIHKWKAHSESVTNFITGVGICTCTLVSCSMDCTCKFWSLTNGIIQMRTVTFPCAIFGFVMDSTESGFYAAGSDGFIYKGLIKVGSRKMFGKGKAYELVNWGKTKRHGGSIVSLFLVNEGRNLVSGSEDGSVWMWDVEEGEVIMVLVNDQILGRTRSISDMIVVKGTNNNNGFSVTSGEGGRGFSSTGLCDEEMIRTLKQITEVGNLMDVAVHDKGRAIDMLESTIAMYERLLRLILREATKAIEETDGDEDKDNKGKKD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02240 421 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
Car07g02240 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 302 - -
Car07g02240 421 PANTHER WD-REPEAT PROTEIN 18 2 410 IPR045227 -
Car07g02240 421 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 302 IPR011047 -
Car07g02240 421 Gene3D - 158 338 IPR015943 GO:0005515
Car07g02240 421 SMART WD40_4 256 297 IPR001680 GO:0005515
Car07g02240 421 SMART WD40_4 21 64 IPR001680 GO:0005515
Car07g02240 421 SMART WD40_4 159 200 IPR001680 GO:0005515
Car07g02240 421 SMART WD40_4 108 147 IPR001680 GO:0005515
Car07g02240 421 Pfam WD domain, G-beta repeat 268 297 IPR001680 GO:0005515
Car07g02240 421 Pfam WD domain, G-beta repeat 110 145 IPR001680 GO:0005515
Car07g02240 421 Pfam WD domain, G-beta repeat 163 200 IPR001680 GO:0005515
Car07g02240 421 PANTHER OS09G0477800 PROTEIN 2 410 - -
Car07g02240 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 115 145 IPR001680 GO:0005515
Car07g02240 421 Gene3D - 2 157 IPR015943 GO:0005515
Car07g02240 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02240 90 300 U-box Gene Family AT1G04510 26.697 3.19e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02240 K14829 - gmx:100785191 462.225