Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02234 ATGAAATTTTTAGGGGATGATGAAATATATCTTGGAGGTTATATACATTTGGGGGAAGGTCACTGTTGTTTTTGTCTTAACTGTGTCCATTCAATACCACTAGCCATAGTTGAAGTAGAAGAGATATCTGGTGCAAGACCTGCTGAAGTTTTGAACTTGGGACTTGCGCCTGAGATTCCTGAGGATTTGTACCATTTGATAAAGAAGGTTTTTTCAATCCATAAGCATTTGAAGAGGAACAAGAAGGACAAGGACTCCAAGTTCAGACTCATCCTTGTTGAGAGCAGAATCCATCGACTGGCTCGCTATTACAAGAAAACTAAGAAGTTTCCCACTGTATGGAAATAcaatggataa 357 0.381 MKFLGDDEIYLGGYIHLGEGHCCFCLNCVHSIPLAIVEVEEISGARPAEVLNLGLAPEIPEDLYHLIKKVFSIHKHLKRNKKDKDSKFRLILVESRIHRLARYYKKTKKFPTVWKYNG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02234 118 Pfam Ribosomal protein S15 58 109 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car07g02234 118 PANTHER 40S RIBOSOMAL PROTEIN S13 36 117 - -
Car07g02234 118 SMART Ribosomal_S15_2 46 116 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car07g02234 118 CDD Ribosomal_S15p_S13e 57 117 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car07g02234 118 Gene3D - 57 118 - -
Car07g02234 118 ProSitePatterns Ribosomal protein S15 signature. 73 103 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car07g02234 118 SUPERFAMILY S15/NS1 RNA-binding domain 53 117 IPR009068 -
Car07g02234 118 PANTHER RIBOSOMAL PROTEIN S15P/S13E 36 117 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02234 Car-Chr7 32626320 32629239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02234 17 118 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 61.165 1.69e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02234 K02953 - qsu:112033409 124.79