Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02182 ATGTTCTTCGTGCAGCCTTTGGCAGCCTTTGACTCAAATTGGTATGATGCAAGTGCAACTTTCTACGGTGACATGAACGGTGGTGACACCATGCAGGGAGCATGTGGTTATGGAGATCTATTCCAGCAAGGATATGGGCTTGAAACAACAGCACTAAGCACAGCTCTATTCAATAATGGGTTATCATGTGGAGCATGTTTTGAGATAAGGTGTGTGAATGATCCTCAATGGTGTATAAAAGAAGTAAACTCAATCACAGTGACAGCAACAAATTTATGTCCTCCCAATTACATAGACGGAAGTTGGTGTAACCCTCCACATCAACACTTTGATTTGAGTATGAAAATGTTCACAACTATTGCAATTTACCAAGCTGGGATAATCCCAGTTCAATATCGACGTGTTCCATGTAACAAAATTGGGGGTGTTAGGTTTGAGCTAAGAGGTAACCCTTATTTTTTGATGGTTTTGGTGTACAATGTTGGTAACGCTGGTGATGTTTATCGTTTGGATGTTAAAGGATCTAACACTGGTTGGATTGAAATGACACATAATTGGGGACAATTTTGGCATACTGGTGTCAATTTGGTTGGTCAAGAATTGTCTTTTTGGATTAATACAAGTGATGGAAAAGCTTTGATGTTTATTTCTGTTGCTCCTTCTAATTGGCAATTTGGACAGACTTATCAGAGCTCCCTAAATTTTTAG 708 0.3927 MFFVQPLAAFDSNWYDASATFYGDMNGGDTMQGACGYGDLFQQGYGLETTALSTALFNNGLSCGACFEIRCVNDPQWCIKEVNSITVTATNLCPPNYIDGSWCNPPHQHFDLSMKMFTTIAIYQAGIIPVQYRRVPCNKIGGVRFELRGNPYFLMVLVYNVGNAGDVYRLDVKGSNTGWIEMTHNWGQFWHTGVNLVGQELSFWINTSDGKALMFISVAPSNWQFGQTYQSSLNF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02182 235 Gene3D - 4 138 IPR036908 -
Car07g02182 235 PANTHER EXPANSIN-A15 3 235 IPR002963 GO:0009664
Car07g02182 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 32 142 IPR007112 -
Car07g02182 235 PANTHER EXPANSIN-A21-RELATED 3 235 - -
Car07g02182 235 PRINTS Expansin signature 85 95 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 117 130 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 44 58 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 153 174 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 71 82 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 141 153 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 217 233 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Car07g02182 235 PRINTS Expansin signature 100 117 IPR002963 GO:0009664
Car07g02182 235 Gene3D - 142 235 IPR036749 -
Car07g02182 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 152 231 IPR007117 -
Car07g02182 235 PRINTS Expansin/Lol pI family signature 179 193 IPR007118 GO:0005576
Car07g02182 235 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Car07g02182 235 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Car07g02182 235 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Car07g02182 235 PRINTS Expansin/Lol pI family signature 13 28 IPR007118 GO:0005576
Car07g02182 235 PRINTS Expansin/Lol pI family signature 31 49 IPR007118 GO:0005576
Car07g02182 235 SUPERFAMILY Barwin-like endoglucanases 2 160 IPR036908 -
Car07g02182 235 SUPERFAMILY PHL pollen allergen 141 231 IPR036749 -
Car07g02182 235 Pfam Lytic transglycolase 49 132 IPR009009 -
Car07g02182 235 SMART dpbb_1 49 132 IPR007112 -
Car07g02182 235 Pfam Expansin C-terminal domain 143 220 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02182 Car-Chr7 30330541 30331752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02182 9 235 Expansin Gene Family AT5G39280 62.882 3.25e-110 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02182 - - cam:101510232 508.449