Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02181 ATGGCTATGTCTTTGCTTCCTTTAGCCTTGTTCACATTGTTCTTCGTGCAGCCTTTGGCAGCAATTGACCCAAATTGGTATGATGCAAGTGCAACTTTCTACGGTGACATGAACGGTGGTGAAACCATGCAGGGAGCATGTGGTTATGGAGATCTATTCCAGCAAGGATATGGGCTTGAAACAACAGCACTAAGCACAGCTCTATTCAATAATGGGTTATCATGTGGAGCATGTTTTGAGATAAGGTGTGTGAATGATCCTCAATGGTGTATAAAAGAAGTAAACTCAATCACAGTGACAGCAACAAATTTATGTCCTCCCAATTACATAGACGGAAGTTGGTGTAACCCTCCACATCAACACTTTGATTTGAGTATGAAAATGTTCACAACTATTGCAATTTACCAAGCTGGGATAATCCCAGTTCAATATCGACGTGTTCCATGTAACAAAATTGGGGGTGTTAGGTTTGAGCTAAGAGGTAACCCTTATTTTTTGATGGTTTTGGTGTACAATGTTGGTAACGCTGGTGATGTTTATCGTTTGGATGTTAAAGGATCTAACACTGGTTGGATTGAAATGACACATAATTGGGGACAATTTTGGCATACTGGTGTCAATTTGGTTGGTCAAGAATTGTCTTTTTGGATTAATACAAGTGATGGAAAAGCTTTGATGTTTATTTCTGTTGCTCCTTCTAATTGGCAATTTGGACAGACTTATCAGAGCTCCCTAAATTTTTAG 744 0.3925 MAMSLLPLALFTLFFVQPLAAIDPNWYDASATFYGDMNGGETMQGACGYGDLFQQGYGLETTALSTALFNNGLSCGACFEIRCVNDPQWCIKEVNSITVTATNLCPPNYIDGSWCNPPHQHFDLSMKMFTTIAIYQAGIIPVQYRRVPCNKIGGVRFELRGNPYFLMVLVYNVGNAGDVYRLDVKGSNTGWIEMTHNWGQFWHTGVNLVGQELSFWINTSDGKALMFISVAPSNWQFGQTYQSSLNF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02181 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Car07g02181 247 Gene3D - 154 247 IPR036749 -
Car07g02181 247 Pfam Lytic transglycolase 61 144 IPR009009 -
Car07g02181 247 Gene3D - 16 150 IPR036908 -
Car07g02181 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Car07g02181 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 154 IPR007112 -
Car07g02181 247 PANTHER EXPANSIN-A21-RELATED 12 247 - -
Car07g02181 247 SUPERFAMILY PHL pollen allergen 153 243 IPR036749 -
Car07g02181 247 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Car07g02181 247 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Car07g02181 247 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Car07g02181 247 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Car07g02181 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Car07g02181 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Car07g02181 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Car07g02181 247 PANTHER EXPANSIN-A15 12 247 IPR002963 GO:0009664
Car07g02181 247 SUPERFAMILY Barwin-like endoglucanases 25 172 IPR036908 -
Car07g02181 247 SMART dpbb_1 61 144 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02181 Car-Chr7 30266090 30267662 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02181 21 247 Expansin Gene Family AT5G39280 62.882 2.15e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02181 - - cam:101510232 513.842