Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02177 ATGAGTGGTCATCAAGTAATGAATTCCTCTTTTTGGAGCTTTGTTTTAGTTGTTGTGATAGTAACATTATTCACTACAATTGTTAGTTCTTCCAAACAATCTCAAATAGAAGGCATGGAAATGAATGTGATTGATCAATGTTGGAGATTTAATCCAGAATGGAGGAAACATCGACAACAACTTGCCAGATGCTCAGTTGGCTATGTAGGAAAAATGACAAGCAACATAGATAAAGACCTTGTTCATTATAAAGTTACTGATCCTAGTGATCACCCCTTAAACCCACAACCTGGAACTTTGAGATATGGAGCTTCTAACATTCAAAGTAAAGTTTGGATCACATTCCAAAGAGACATGAACATTAGACTTGAGAAGCCCCTTCTTATTAGTAGTTTCACTACCATTGATGGTCGAGGTGTCAATGTCCACATCGCTAATAATGCATGCTTGATGATCTATAAGGCAACAAACATAATCATCCATGGAATTAGGATTCATCATTGTCGACCTCAAGCTCCCGGAATGGTGATGGGTCCCAATGGAAAGATAATATCGTTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCTGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATAGCCAAGATGGTCTTCTTGATGTTACACGAGGTTCTACTGATGTGACAATCTCCAACAATTGGTTTAGGGAGCAGGATAAGGTTATGCTTCTTGGACACGATGATGGATTCATAAGAGACAAGAACATGAAAGTAACTGTCGTATACAACTATTTTGGGCCTAATTGCCGCCAACGCATGCCTAGAATTCGTCACGGATATGCACATGTTGCAAACAATCTCTACATGGGATGGACGCAATATGCAATTGGTGGAAGCAGCGGACCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACCAACAGAAAATAAGGAG 951 0.3922 MSGHQVMNSSFWSFVLVVVIVTLFTTIVSSSKQSQIEGMEMNVIDQCWRFNPEWRKHRQQLARCSVGYVGKMTSNIDKDLVHYKVTDPSDHPLNPQPGTLRYGASNIQSKVWITFQRDMNIRLEKPLLISSFTTIDGRGVNVHIANNACLMIYKATNIIIHGIRIHHCRPQAPGMVMGPNGKIISLGQVDGDAIRLVSASKIWIDHNTLYDSQDGLLDVTRGSTDVTISNNWFREQDKVMLLGHDDGFIRDKNMKVTVVYNYFGPNCRQRMPRIRHGYAHVANNLYMGWTQYAIGGSSGPSLKSQSNLFIAPTENKE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02177 317 Pfam Pectate lyase 129 309 IPR002022 -
Car07g02177 317 SUPERFAMILY Pectin lyase-like 36 313 IPR011050 -
Car07g02177 317 SMART amb_all 118 315 IPR002022 -
Car07g02177 317 Gene3D - 41 317 IPR012334 -
Car07g02177 317 PANTHER PECTATE LYASE 18-RELATED 14 315 IPR045032 GO:0030570
Car07g02177 317 PANTHER PECTATE LYASE 14 315 - -
Car07g02177 317 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Car07g02177 317 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Car07g02177 317 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Car07g02177 317 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Car07g02177 317 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02177 Car-Chr7 30060217 30108053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02177 72 312 Polysaccharide Lyase AT5G09280 70.539 7.95e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02177 K01728 - gmx:100811216 535.798