Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02176 ATGGAATCTACATGCTTTGGTTCTAATGAGAAAGTCTCACTAAAGCGAAAATCGAAATCCACTACAGCAGAGATAGCAATCTCTAATAGTGAAAATGGTTGCTTTGATTGCAATATTTGTTTGGAATCAGCACATGACCCTGTGGTTACTCTCTGTGGTCACCTCTATTGCTGGCCATGCTTATACAAGTGGCTTAATGTCCAAACCTCTTCGGTTGAGCCGCATCAACGGCAGACATGCCCGGTTTGTAAAACTGTGATCTCCCATACTTCATTAGTTCCTCTTTACGGCCGCGGAAAATCTAGTTCAGAAACAGAAGCCAAGAAACTCCAGGTCGGTTTAGGTATACCTCATAGACCACCTCCTTACAACTTGAATGCCATGTTAACTTCTAATCGGGCATCAAATTCACATCACGCGGAGCAACTCCATCCAAACTATTTCCAGTCATCACAATCACAGCCATTTCATTATCAGCACTACTTTCCTCAACTTTATGGAGGTTATGGTGCCAATGGATTACCTTATCTTGGTGGTGCTGCTATGACTAGTTTCTTCAATCCGGTGATTGGTTTGTTTGGAGAGATGGTGTTGACAAGGATATTTGGGGTCTCTGATGCAAATTCGTTTTCTTACCCTCAAAATGGAAGTACTAGTCCTAGAATGAGAAGACAGGAGATGCAGATTGACAAGTCTTTAAACAGAGTTTCTATCTTTCTTCTTTGTTGTATCATTTTGTGTCTTCTCTTGTTTTGA 756 0.4127 MESTCFGSNEKVSLKRKSKSTTAEIAISNSENGCFDCNICLESAHDPVVTLCGHLYCWPCLYKWLNVQTSSVEPHQRQTCPVCKTVISHTSLVPLYGRGKSSSETEAKKLQVGLGIPHRPPPYNLNAMLTSNRASNSHHAEQLHPNYFQSSQSQPFHYQHYFPQLYGGYGANGLPYLGGAAMTSFFNPVIGLFGEMVLTRIFGVSDANSFSYPQNGSTSPRMRRQEMQIDKSLNRVSIFLLCCIILCLLLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02176 251 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Car07g02176 251 SUPERFAMILY RING/U-box 34 96 - -
Car07g02176 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 141 IPR013083 -
Car07g02176 251 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Car07g02176 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 251 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car07g02176 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 6 251 - -
Car07g02176 251 CDD RING-HC_AtRMA_like 35 84 - -
Car07g02176 251 SMART ring_2 37 83 IPR001841 -
Car07g02176 251 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02176 Car-Chr7 30037692 30040124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02176 15 237 C3H Transcription Factor Family AT4G27470 49.339 3.06e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02176 K10666 - gmx:100817526 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02176 07 30037692 30040124 Car07g02176 07 30037692 30040124 ECH