Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02171 ATGGGTTGTCATCAAGTAATCAATTCCTCTTTTTGGAGCTTTGTTTTAGTTGTTGTGATAGTAACATTCTTCACTACAATTGTTAGTTCTTCCAAACAATCTCAAATAGAAGGCATGGAAATGAATGTGATTGATCAATGTTGGAGATTTAATTCAGAATGGAGGAAACATCGCCAACAACTTGCCAGGTGCTCAGTTGGCTATGTAGGAAAAATGACAAACAACATAGGTAAAGTTTGGATCACATTCCAAAGGGACATGAACATTAGACTTGAGAAGCCCCTTCTTATTAGTAGTTTCACTACCATTGATGGTCGAAGTGTCAATATCCACATCGCTAATAATGCATGCTTGATGATCTATAAGGCAACAAACATAATTATCCATGGAATTAGGATTCATCATTGTCGACCTCAAGCTCCCGGAATGGTGATGGGTCCCAATGGAAAGATAATGTCGTTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCTGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATAGCCAAGATGGTCTTCTTGATGTTACACGAGGTTCTACTGATGTGACAATCTCCAACAATTGGTTTAGGGAGCAGGATAAGGTTATGCTTCTTGGACACGATGATGGATTCATAAGAGACAAGAACATGAAAGTAACTGTCGTATACAACTATTTTGGGCCTAATTGCCGCCAACGCATGCCTAGAATTCGTCACGGATATGCACATGTTGCAAACAATCTCTACATGGGATGGACGCAATATGCAATTGGTGGAAGCAGCAGTCCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACCAACAGAAAATAAGGAGGTAACATGGAGAAAAAGTAGTAATGGAATTGGAGATACGTGGAAATTTTATTCAGTTGGAGACGCCTTTGAAAATGGTGCATCCTTCATAGATACGAAAGGTGGGCAAGTGAAAAAACCCAATTATATCCCTGAACAAGATTTTGAAGTTGTTGATTCCAAATATGTGAGATCATTGACAAGCTCCTCGGGAGTGTTACAGTGTAGTAAAACTTCAATATGTTAA 1080 0.388 MGCHQVINSSFWSFVLVVVIVTFFTTIVSSSKQSQIEGMEMNVIDQCWRFNSEWRKHRQQLARCSVGYVGKMTNNIGKVWITFQRDMNIRLEKPLLISSFTTIDGRSVNIHIANNACLMIYKATNIIIHGIRIHHCRPQAPGMVMGPNGKIMSLGQVDGDAIRLVSASKIWIDHNTLYDSQDGLLDVTRGSTDVTISNNWFREQDKVMLLGHDDGFIRDKNMKVTVVYNYFGPNCRQRMPRIRHGYAHVANNLYMGWTQYAIGGSSSPSLKSQSNLFIAPTENKEVTWRKSSNGIGDTWKFYSVGDAFENGASFIDTKGGQVKKPNYIPEQDFEVVDSKYVRSLTSSSGVLQCSKTSIC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02171 359 PANTHER PECTATE LYASE 18-RELATED 12 78 IPR045032 GO:0030570
Car07g02171 359 SMART amb_all 86 283 IPR002022 -
Car07g02171 359 SUPERFAMILY Pectin lyase-like 76 347 IPR011050 -
Car07g02171 359 PANTHER PECTATE LYASE 18-RELATED 78 356 IPR045032 GO:0030570
Car07g02171 359 PANTHER PECTATE LYASE 12 78 - -
Car07g02171 359 PRINTS Pollen allergen Amb family signature 299 323 IPR018082 -
Car07g02171 359 PRINTS Pollen allergen Amb family signature 330 353 IPR018082 -
Car07g02171 359 PRINTS Pollen allergen Amb family signature 238 257 IPR018082 -
Car07g02171 359 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Car07g02171 359 PRINTS Pollen allergen Amb family signature 94 110 IPR018082 -
Car07g02171 359 PRINTS Pollen allergen Amb family signature 158 179 IPR018082 -
Car07g02171 359 PANTHER PECTATE LYASE 78 356 - -
Car07g02171 359 Gene3D - 41 352 IPR012334 -
Car07g02171 359 Pfam Pectate lyase 97 277 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02171 Car-Chr7 29949418 29951245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02171 77 286 Polysaccharide Lyase AT5G09280 69.668 2.10e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02171 K01728 - gmx:100811216 575.474