Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02170 ATGACTGGTCATCAAGTAATCAATTCCAACTTTTGGAGCTTTGTTTTAGTTGTTGTGATGATAACATTGTTCATTACAATTGTTATTTCTTCCAAACAATCTCAAATAGAAGGTATGGAAATGAATGTGATTGATCAATGTTGGAGATTTAATCCTGAATGGAGGAAACATCGACAACAACTTGCCAGGTGTTCAATTGGCTATGTAGGAAAAATGACAAACAACATAGGCAACAAACATAATAATCCAGGAATTAGGGTTCATCATTGTCAACCTCAAGCTCTCGGAATGGTGATGGCTCCCAATGGAAAGATAATGTCGTTGGATGGTCTTCTTGATGTTACACGAGGTTCTATTGATGTGACAATCTCCAACAATTGGTTTAGGGAGCAAGATAAGGTTATGCTTCTTGGACACGATGATGGATTCGTAAGAGACAAGAACATGAAAGTAACTGTCGTATACAACTATTTTGGGCCTAATTGCCGCCAACGCATGCCTAGAATTCGTCATGGATATGCACACGTTGAAAACAATTTGTACATGGGATGGACGCAATATGCAATTGGTGAAAGCAGTGAACCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACCAAAAGAGAATAAGGAGACTCCTCGAGAATGTTACAGTGCAGTAAAACTTCAATATGCTAAGTTAAATTTCGTGAAGAATAACTTTCTCAATCTCATAGACCACAATCTTATTGATTTTGAAAGATTAGATGTTCCTGTACTAAGAAAATGA 771 0.3709 MTGHQVINSNFWSFVLVVVMITLFITIVISSKQSQIEGMEMNVIDQCWRFNPEWRKHRQQLARCSIGYVGKMTNNIGNKHNNPGIRVHHCQPQALGMVMAPNGKIMSLDGLLDVTRGSIDVTISNNWFREQDKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCRQRMPRIRHGYAHVENNLYMGWTQYAIGESSEPSLKSQSNLFIAPKENKETPRECYSAVKLQYAKLNFVKNNFLNLIDHNLIDFERLDVPVLRK 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02170 256 Pfam Pectate lyase 81 204 IPR002022 -
Car07g02170 256 PANTHER PECTATE LYASE 109 212 - -
Car07g02170 256 PANTHER PECTATE LYASE 84 108 - -
Car07g02170 256 SUPERFAMILY Pectin lyase-like 37 245 IPR011050 -
Car07g02170 256 PANTHER PECTATE LYASE 18-RELATED 109 212 IPR045032 GO:0030570
Car07g02170 256 PANTHER PECTATE LYASE 18-RELATED 84 108 IPR045032 GO:0030570
Car07g02170 256 SMART amb_all 26 210 IPR002022 -
Car07g02170 256 PANTHER PECTATE LYASE 15 79 - -
Car07g02170 256 PRINTS Pollen allergen Amb family signature 165 184 IPR018082 -
Car07g02170 256 PRINTS Pollen allergen Amb family signature 187 206 IPR018082 -
Car07g02170 256 Gene3D - 28 240 IPR012334 -
Car07g02170 256 PANTHER PECTATE LYASE 18-RELATED 15 79 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02170 Car-Chr7 29945175 29947105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02170 84 252 Polysaccharide Lyase AT5G09280 47.959 1.07e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02170 K01728 - gmx:100811216 211.846