Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02123 ATGAGCGATCATTTGGTGTTGTTTGTTGACCGTCTTGTACGGCCCATGCCGGTTGAGCCTCTGGCTCAACATCCGGCCCAGCCTGCTCCTGAGCCGTTACCGCCTGTGAATGAGACACCAGCGGGACCATCCAGTTCTTCACCGgaggatgatgatgatgatgaCGGCGGCGAGGACGAGCCGCTGTTGCAGATGGCGGAATGTCGCATTTGTCAGGATGAGGACAGCATTAATAATCTGGAGTCTCCATGCGCATGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGCGTCCAACGTTGGTGCAACGAAAAAGGAGACATAACTTGTGAAATTTGTCATAAGTCATATGAACCTGGTTATACTGCTCCACCACCGCGTCCAAATCCCGAAGAAACTACCATTGATATAGGCGGAGGCTGGACAATTTCTGGTACGCCTTTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTCGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAATGGAGCTGCATTTTGTCGTTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGACACGCACTTTCTGTCACGGACGCTGATGCCGAGGATGATCCATCAACTTTTTTCTCTGTAAGTGACTTGACTTTCTTATATCTGAAGTAG 684 0.4766 MSDHLVLFVDRLVRPMPVEPLAQHPAQPAPEPLPPVNETPAGPSSSSPEDDDDDDGGEDEPLLQMAECRICQDEDSINNLESPCACSGSLKYAHRKCVQRWCNEKGDITCEICHKSYEPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADAEDDPSTFFSVSDLTFLYLK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02123 227 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Car07g02123 227 SMART ringv_2 67 114 IPR011016 GO:0008270
Car07g02123 227 CDD RING_CH-C4HC3_MARCH 68 114 - -
Car07g02123 227 Pfam Protein of unknown function (DUF3675) 119 219 IPR022143 -
Car07g02123 227 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 218 IPR033275 -
Car07g02123 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 218 - -
Car07g02123 227 MobiDBLite consensus disorder prediction 19 60 - -
Car07g02123 227 MobiDBLite consensus disorder prediction 21 41 - -
Car07g02123 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 122 IPR013083 -
Car07g02123 227 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Car07g02123 227 SUPERFAMILY RING/U-box 66 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02123 Car-Chr7 27058485 27062535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02123 67 143 C3H Transcription Factor Family AT2G37950 34.831 2.71e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02123 - - gmx:100817542 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02123 07 27058485 27062535 Car07g02123 07 27058485 27062535 ECH