Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02122 ATGGACATGACCATAGATGCAGATGCTAAAACACCACCATCAACCCAACCCAACAACACAACAACTTTAAAGTCTTCACCTTTCACAAACGGCACACACAAACGCCACCAGTTAACCATCACTCCTCCGCCGCATCAACCACCACCATCCATGGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCTGCAGCTTTAGGTGGACATGCACTTGATGGATGTGGCGAATTCATGCCTTCTTCTTCTGTTAATCTCAATGACCCTCGTTCCCTCAAATGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGACCCTCAAGAACAcatcatcaccaccaccgccgcaaccaccaacaacaATTTTGTAAGTTGCATTTACACAACACCTTCAACAACAGTTccaccaccacaaccaccactaccacAATCGCACCGTGGACCAATTagtcaaagcacaagtccaagtcaaagtacaagcccaagtcaaagcccaagcccaatttcaagcccaTCATCACCACCACCACTCTCACATTTACCACCTTCTTCTTACCACACTTCAGCACCCCACATGCTTTTAGCACTTGGAAATGCTTATTCAACAACACCACCAACAACTTCCAATCATGATCAACATCATCAAAGACATATCAATTTTTCCTCCTCCGTTGTTAAGATTGAGAACAACCCAAGTGGAAAAAAGAGGTACAGAACAAAATTCAGCAAAGAACAGAAAGAGAAGATGCAAAAATTTTCTGAGAAATTGGGATGGAGAATGCAAAAGGGTGATGATGGATTGGTTCAGAAATTCTgcaatgatgttggtgtttcaagaggggttttcaaagtttggatgcataacaataagaataaGAGATCAGAATCTGATGTTGGAATTGGAATTGGAATTGGTGATCAAAATGTTGATGATAAGAACAATGATGGTGGTGGAAGTGGATTTCGCAGTGATATTAACAATGAGATTCATACGAGTGAAGATGGCTGTGTCAATAATGTTCATGTTTCTTCTGTTAATGGTAATTGA 1050 0.3371 MDMTIDADAKTPPSTQPNNTTTLKSSPFTNGTHKRHQLTITPPPHQPPPSMVVSYKECLKNHAAALGGHALDGCGEFMPSSSVNLNDPRSLKCAACGCHRNFHRRDPQEHIITTTAATTNNNFVSCIYTTPSTTVPPPQPPLPQSHRGPISQSTSPSQSTSPSQSPSPISSPSSPPPLSHLPPSSYHTSAPHMLLALGNAYSTTPPTTSNHDQHHQRHINFSSSVVKIENNPSGKKRYRTKFSKEQKEKMQKFSEKLGWRMQKGDDGLVQKFCNDVGVSRGVFKVWMHNNKNKRSESDVGIGIGIGDQNVDDKNNDGGGSGFRSDINNEIHTSEDGCVNNVHVSSVNGN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02122 349 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 235 292 IPR006455 -
Car07g02122 349 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 106 IPR006456 -
Car07g02122 349 MobiDBLite consensus disorder prediction 168 182 - -
Car07g02122 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 147 299 - -
Car07g02122 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 117 - -
Car07g02122 349 SUPERFAMILY Homeodomain-like 224 293 IPR009057 -
Car07g02122 349 MobiDBLite consensus disorder prediction 146 167 - -
Car07g02122 349 Gene3D - 222 298 - -
Car07g02122 349 MobiDBLite consensus disorder prediction 9 39 - -
Car07g02122 349 MobiDBLite consensus disorder prediction 1 49 - -
Car07g02122 349 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
Car07g02122 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11-LIKE 147 299 - -
Car07g02122 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11-LIKE 51 117 - -
Car07g02122 349 Pfam ZF-HD protein dimerisation region 53 107 IPR006456 -
Car07g02122 349 MobiDBLite consensus disorder prediction 130 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02122 Car-Chr7 26898437 26899785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02122 51 291 ZF-HD Transcription Factor Family AT1G69600 45.714 7.69e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car07g02122 ZF-HD_dimer 4.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02122 - - mtr:MTR_8g467340 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02122 07 26898437 26899785 Car07g02122 07 26898437 26899785 ECH