Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02101 ATGGCTGATCTTCAGAAAACTGGTCTTGGTGGCGACAGTAGGGATATCGAGCAGGCACTTACATCTCTTAAGAAAGGTTCATATCTGCTAAAGTATGGACGACGAGGGAGGCCAAAGTTCTGCCCTTTTAGGCTTTCCAATGATGAGTCTCTACTCATATGGTACTCTGGCAAGGAAGAAAAACAAATTAAGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTCCAGCGGTATCCGCGACCTGAAAAGGAGTATCAGTCATTTTCACTTATATACAATGATAGGTCCTTGGATTTGATCTGCAAGGACAAAGATGAAGCTGAAATCTGGTTTGCCGGTCTGAAAGCATTAGTTACCCGAGGTAACTATCGCAAGTGGCGATTTGAATCAAGACCTGAAAGTCTGTATTCTGAGAGTCCAAAGTCTGGCACAAGAAGATCCACTCCATCAGTTGCACCATTTGATCCCGGAGATACCGACAGAGTTGCTTTTCAAAATTCTTCGCAAAATAGATGGGTGAAGGCTTTCTCTGAAATAATTTCATACACTGCACCTAGCAAGAGCTCCAGTCAAGCTGAATCAATTACCAATTCTTCTTTATCCTCTGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTAAGTTTATCCAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTGTCATGAAGATTTTGATTCTTTAGGTGATGTTTTCATTTGGGGAGAAGGTATCAATGATGGAGTTCTTGGCGGGGGTATGCATAGAGTTGGAACCTTATCTATTTCAGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAAGTTGTTCTAGATGTTCAAAGTATTGGTTGTGGCTATAAGCATGCTGTTCTAGTTACCAAGCAGGGAGAAATATTTAGCTGGGGGGAGGAGTCAGGAGGTAGGCTTGGACACGGTGCAGAAGTGGATGTTTTTCACCCTAAGCTCATTGAAACTCTTAATGGCGTGAATATTGAGTTTGTAGCATGTGGAGAATATCATACTTGCGCTGTTACATATTCTGGCGATCTTTATACCTGGGGTGATGGTACTCACAATTCTGGCTTACTTGGGCATGGAAATGAAGTTAGTCACTGGATTCCTAAGAAAGTAACTGGTGCATTGGAAGGATTACGTGTATCATATGTGTCCTGCGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTTACATTTGGCGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGCAGCACAAATATTCCTCGTGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTCTCATGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCTGTCGAATCTTCTTCGCAGTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGACAAAGGCCAACTTGGATATGTTGATAAGAAACCTAGACTAGTTCCTGAGCGTGTAATTGCATTGGCTAATGAAAACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGTGGCATTGACAACGTCAGGACATGTATATACAATGGGAAGTACAGCTTACGGTCAACTTGGTTGTCCTGCTGCAGGTGGGAAGTTCCCTACTCGTGTTGAAGATAAAATCGCTGACAGTTTCATAGAAGATATTGCCTGCGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTAAATGGGCAATTAGGCCACGGTGACAATGATCACAGGAATAAGCCCACACTTGTCGAGTTCTTAAAAGATAAGCAAGCAAAGAGTATTTTTTGTGGTTCAAACTTCACCGCTGTTGTTTGTCTCCATAAATGGATACCGAGTGTTGATCATTCTGCATGTTCAGGCTGTCGTAATCCATTCAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAAATCATGCACCAGCAAGAAATCTATGAAGGCTTCCCTTGCTCCAAATTCCTACAAGCCATATCGTGTTTGTGATGACTGTTATTATAAGATTAAGAAAGCTTCTGAATCAGTATCCTTCTTGCCAAGTCCTAACTTGAGAAGTGTCAGTTTGCAAGACAGTAGGGTGACTAAAACACAGGGAACACTATTAAGACTTTCTTCATTTGGTTCTATTGTTCACTCAGAAAGCAGTCACTCAAAGCTTCCAGAATCACACGATAGCCATATTTTTCCAGGTTTGAATGGAAAACTTCAGCTGGGGGGATTTGTTCCTTCAAAATCATCAAACTCTCTTTCGGGGGAATATAGGAAATACCTGTCTGTTTCTGAGCCTGCTATAAGAATATCTTGTCAGTCAAACTCTCCAGTTTCATCAAAGTCAAGCCCACGACAATCTTGTGAAGATATTATACATGATGATTTAAAACAAAGAAATGATATTCTAAATCACGAAGTTATAAGTTTAAGAGCACAGGTTGAAGATCTTACTCGTAAGTCAAAAAGTCTTGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGTAGTAGCCGCAGATGAAGCTGGAAAATGTGAATCTGCAAAAGAGGTTATAAAGTCATTGACAGCTCAGCTGAAGGAAATGATGCTAAGACTGCCAGAAAGACATAATGCTTACTACAGCACAGATTCCGACGTGGAAACCACTAACAGGATTCTAGATCAGTCCTTAGATGAGAATCATATAACAAACAACATCGTTCCCAAAAATGCAAGCGTTAGCAATGCAGAAAATCTGGTATTGCCTATTGGTGCCACAACACAAAGTGGAAAGGCAGAGTGGGTGGTGCAAGATGAACCAGGTGTGTACGTAAGTTTGTCCTCCCTTCCAGGTGGTGGCAATGAACTTAAGCGCGTGCGCTTCAG 2969 0.4217 MADLQKTGLGGDSRDIEQALTSLKKGSYLLKYGRRGRPKFCPFRLSNDESLLIWYSGKEEKQIKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKALVTRGNYRKWRFESRPESLYSESPKSGTRRSTPSVAPFDPGDTDRVAFQNSSQNRWVKAFSEIISYTAPSKSSSQAESITNSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSCHEDFDSLGDVFIWGEGINDGVLGGGMHRVGTLSISEMDAFLPKALESKVVLDVQSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGAEVDVFHPKLIETLNGVNIEFVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGNEVSHWIPKKVTGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSTNIPREVETLKGLRTTRVSCGVWHTAAVVEVINESVESSSQSSSGRLFTWGDGDKGQLGYVDKKPRLVPERVIALANENICRVACGHSLTVALTTSGHVYTMGSTAYGQLGCPAAGGKFPTRVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQAKSIFCGSNFTAVVCLHKWIPSVDHSACSGCRNPFNFRRKRHNCYNCGLVFCKSCTSKKSMKASLAPNSYKPYRVCDDCYYKIKKASESVSFLPSPNLRSVSLQDSRVTKTQGTLLRLSSFGSIVHSESSHSKLPESHDSHIFPGLNGKLQLGGFVPSKSSNSLSGEYRKYLSVSEPAIRISCQSNSPVSSKSSPRQSCEDIIHDDLKQRNDILNHEVISLRAQVEDLTRKSKSLEAELERTSKQLKEVTVVAADEAGKCESAKEVIKSLTAQLKEMMLRLPERHNAYYSTDSDVETTNRILDQSLDENHITNNIVPKNASVSNAENLVLPIGATTQSGKAEWVVQDEPGVYVSLSSLPGGGNELKRVRF 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02101 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 712 IPR013083 -
Car07g02101 989 Gene3D - 14 130 IPR011993 -
Car07g02101 989 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 17 989 - -
Car07g02101 989 SMART fyve_4 633 704 IPR000306 GO:0046872
Car07g02101 989 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 585 636 IPR000408 -
Car07g02101 989 Gene3D - 188 465 IPR009091 -
Car07g02101 989 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Car07g02101 989 Pfam FYVE zinc finger 637 703 IPR000306 GO:0046872
Car07g02101 989 Pfam Pleckstrin homology domain 17 123 IPR001849 -
Car07g02101 989 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 641 703 IPR017455 -
Car07g02101 989 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Car07g02101 989 Gene3D - 474 634 IPR009091 -
Car07g02101 989 ProSiteProfiles BRX domain profile. 960 989 IPR013591 -
Car07g02101 989 SUPERFAMILY FYVE/PHD zinc finger 637 710 IPR011011 -
Car07g02101 989 Pfam Regulator of chromosome condensation (RCC1) repeat 416 464 IPR000408 -
Car07g02101 989 Pfam Regulator of chromosome condensation (RCC1) repeat 480 529 IPR000408 -
Car07g02101 989 Pfam Regulator of chromosome condensation (RCC1) repeat 586 633 IPR000408 -
Car07g02101 989 Pfam Regulator of chromosome condensation (RCC1) repeat 360 411 IPR000408 -
Car07g02101 989 Pfam Regulator of chromosome condensation (RCC1) repeat 532 581 IPR000408 -
Car07g02101 989 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Car07g02101 989 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 247 308 IPR000408 -
Car07g02101 989 PRINTS Chromosome condensation regulator RCC1 signature 580 601 IPR000408 -
Car07g02101 989 PRINTS Chromosome condensation regulator RCC1 signature 259 275 IPR000408 -
Car07g02101 989 PRINTS Chromosome condensation regulator RCC1 signature 522 540 IPR000408 -
Car07g02101 989 PRINTS Chromosome condensation regulator RCC1 signature 361 377 IPR000408 -
Car07g02101 989 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Car07g02101 989 PRINTS Chromosome condensation regulator RCC1 signature 418 432 IPR000408 -
Car07g02101 989 PRINTS Chromosome condensation regulator RCC1 signature 402 418 IPR000408 -
Car07g02101 989 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 584 IPR000408 -
Car07g02101 989 Pfam Transcription factor regulating root and shoot growth via Pin3 959 989 IPR013591 -
Car07g02101 989 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 454 464 IPR000408 -
Car07g02101 989 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Car07g02101 989 MobiDBLite consensus disorder prediction 140 154 - -
Car07g02101 989 Coils Coil 879 899 - -
Car07g02101 989 Pfam Transcription factor BRX N-terminal domain 874 901 IPR027988 -
Car07g02101 989 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 295 305 IPR000408 -
Car07g02101 989 MobiDBLite consensus disorder prediction 139 165 - -
Car07g02101 989 SUPERFAMILY PH domain-like 16 123 - -
Car07g02101 989 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 415 IPR000408 -
Car07g02101 989 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 989 - -
Car07g02101 989 Coils Coil 823 871 - -
Car07g02101 989 SUPERFAMILY RCC1/BLIP-II 245 638 IPR009091 -
Car07g02101 989 CDD PH_PLC_plant-like 14 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02101 Car-Chr7 26371689 26390292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02101 876 989 Major Intrinsic Protein MIP AT1G31880 25.850 5.83e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02101 - - pvu:PHAVU_003G066900g 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02101 07 26371689 26390292 Car07g02101 07 26371689 26390292 ECH