Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02099 ATGTCTAGCAGAAGATCTGGTTCAAGACAATCTGGTGTTTCATCTGAAATCACTGATGCTCAAATTAATGATCTTATTAACAAGTTACAACGACTTATCCCTGAACTTGCAAGGCGTTCCGACAAGGTTTCACCTACTAAGGTGTTGAAGGAGACTTGCAATTACATCAAAAACTTGCACCGAGAGGTTGATGATTTAAGTGACCGATTATCACAACTTTTGGACACCATAGACCCTAACAGCGCTCAAGCAGCTATTATTAGGAGTTTATTTATGTGA 279 0.3907 MSSRRSGSRQSGVSSEITDAQINDLINKLQRLIPELARRSDKVSPTKVLKETCNYIKNLHREVDDLSDRLSQLLDTIDPNSAQAAIIRSLFM 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02099 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Car07g02099 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Car07g02099 92 CDD bHLH_AtPRE_like 14 76 - -
Car07g02099 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Car07g02099 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 83 IPR036638 GO:0046983
Car07g02099 92 Coils Coil 56 76 - -
Car07g02099 92 Pfam Helix-loop-helix DNA-binding domain 21 59 IPR011598 GO:0046983
Car07g02099 92 Gene3D - 20 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02099 Car-Chr7 26182481 26184197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02099 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 67.021 1.18e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g02099 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02099 - - gmx:100791371 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02099 07 26182481 26184197 Car07g02099 07 26182481 26184197 ECH
Car07g02099 07 26182481 26184197 Car05g00750 05 42331293 42334258 ECH