Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02094 ATGCAAACCAATTTGGATATGAAAAAGAAGCAGAAGAAGCAGGGTGATAAAGAATCTAACAAGAAGGAGAATCCTTATGCAAACTGGACTCAAGAGGAGGATGGTATACTAAAAGATCAGATTGGAATTCATGGAACTGAAAAGTGGATGATTATTGCATCAAAATTAAAGGGAAAAACAACAAGACAATGCAGAAGAAGATGGTTCTCTTATTTGAATGCTGATGTCAAGAAAGGTGTGTGGTCACCGGATGAAGACAAGGTATTGTGTGAGACCCAAAAAATGTTAGGGAACAGATGGACAGAAATAGCAAAGGTGATTAGAGGCAGAACTGATAATGCTGTGAAAAATCGTTTCTCTGCACTCTGCCGGAAGAGAGAAACATATGCAGCATTAGCAAAAGAGAACAACATTCCATACATTGATCCAAATAACATTAGGAATATTTCCCATCATGGTCATGATACAGCTGCAACGTCAGAATCTACAGTACCCGTTAAAAGCATGAGATCACATTTGCAAAATGGAATTTCAACGAATCCGCAGCCAAGAACACTGTTTGCTGAATTAGCTCAAAACTCCAATAATGTAAACAATCTGCAAGGCCAGTATAACAACAGTCAAGGAACATTCCTCAAAGAGGATGTTTTGAAGATAAGGGCATGTGGACAGACAGAATTTCTAAGTTCACTAGCTCAAAAAGTTGAAATAGAGAACATTAAAAAAATATGGATGGTTCTTCAAGAGTTTCCGAACAGAACAAAAGGATCAGATATTGTTAGACATAAAATTCAAGATTTACCGCCTGTAATTCTTAAAGATATGGTTGAGGAATTGAAGAGTAGTAATGACAGAGGCCATCCCTGCTCGAGGAAAATAAACGAAGACTCTCCAGGAAGTTCGGAATACAGTACAGTATCAACTCTGCTGTCTCAGTCAAATGGTGATAACGTGGAAAGGTCATTGCATCAGGATATTGGAACTCAAATGAAAGCTACACAATTCATAGTTAAAAAAGAAGTGATTGAAGATGTGAAAGGGGTTCTTTATACTGGAAAAGTAGAACAAGATATGTTGGATTACTGTAACGAACAGATAAACGATCACTACGTTGTGTCTGCTTCACCAAAAATGGAATTCAGTTCCCCTCTTCAAGTGACCCCTATTTTCAGATCCTTGGCTGCAGGAATTCCCAGCCCAGAATTTTCTGAAAGTGAAAAGTACTTCCTAAAGAAAACACTAGGAGTGGAGTCTCCATCCATCAAAACAACTTTCAACCCGTTAAAATCGCCACCATGCAAAAGAGCCCTTCGATATAATTTATGA 1326 0.3808 MQTNLDMKKKQKKQGDKESNKKENPYANWTQEEDGILKDQIGIHGTEKWMIIASKLKGKTTRQCRRRWFSYLNADVKKGVWSPDEDKVLCETQKMLGNRWTEIAKVIRGRTDNAVKNRFSALCRKRETYAALAKENNIPYIDPNNIRNISHHGHDTAATSESTVPVKSMRSHLQNGISTNPQPRTLFAELAQNSNNVNNLQGQYNNSQGTFLKEDVLKIRACGQTEFLSSLAQKVEIENIKKIWMVLQEFPNRTKGSDIVRHKIQDLPPVILKDMVEELKSSNDRGHPCSRKINEDSPGSSEYSTVSTLLSQSNGDNVERSLHQDIGTQMKATQFIVKKEVIEDVKGVLYTGKVEQDMLDYCNEQINDHYVVSASPKMEFSSPLQVTPIFRSLAAGIPSPEFSESEKYFLKKTLGVESPSIKTTFNPLKSPPCKRALRYNL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02094 441 SMART sant 25 74 IPR001005 -
Car07g02094 441 SMART sant 77 125 IPR001005 -
Car07g02094 441 PANTHER TRANSCRIPTION FACTOR MYB88 202 439 - -
Car07g02094 441 Pfam Myb-like DNA-binding domain 78 119 IPR001005 -
Car07g02094 441 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Car07g02094 441 ProSiteProfiles Myb-like domain profile. 21 72 IPR001005 -
Car07g02094 441 PANTHER MYB PROTEIN-RELATED 202 439 - -
Car07g02094 441 SUPERFAMILY Homeodomain-like 8 73 IPR009057 -
Car07g02094 441 Gene3D - 80 141 - -
Car07g02094 441 MobiDBLite consensus disorder prediction 1 23 - -
Car07g02094 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Car07g02094 441 MobiDBLite consensus disorder prediction 294 310 - -
Car07g02094 441 CDD SANT 28 72 IPR001005 -
Car07g02094 441 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Car07g02094 441 SUPERFAMILY Homeodomain-like 51 128 IPR009057 -
Car07g02094 441 Gene3D - 17 77 - -
Car07g02094 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 72 IPR017930 -
Car07g02094 441 PANTHER MYB PROTEIN-RELATED 8 150 - -
Car07g02094 441 CDD SANT 81 119 IPR001005 -
Car07g02094 441 PANTHER TRANSCRIPTION FACTOR MYB88 8 150 - -
Car07g02094 441 MobiDBLite consensus disorder prediction 281 310 - -
Car07g02094 441 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02094 Car-Chr7 25903639 25910702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02094 67 441 MYB Transcription Factor Family AT1G14350 40.796 3.93e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g02094 Myb_DNA-binding 9.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02094 K09422 - gmx:100807667 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02094 07 25903639 25910702 Car07g02094 07 25903639 25910702 ECH
Car07g02094 07 25903639 25910702 Car02g00717 02 9559088 9565531 PCT