Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02093 ATGTTCTCTATTTGGTGTGCATGGTGGATGTTGATAGACATGGAATCTGGAAAGGACAGCGGGAAGAAGAAAAAGAATCATATTAAGTCACTTCTTCTAGCTTCAACTGACTCTGAACCTTTATATCTAATCCTGTACACTGAAGAACATTCTAAACCGACTCATGAAATTCAGTCTCTTTTAGAAAAGGCTATTAAAATTGTTAAACAAGCTTATTCTGTTCTTCCTGACTATGACCGAATAGTACCTGCACGTAATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCCGTCGCGAGTGTATCTGAAGCTCTAAATAGATTCCAGGGTATAGAGTTGACCTGCGAATACAAATATGACGGAGAACGTGCTCAGATACATTACATGGAGAATGGCTCTGTAGAGGTTTACAGTAGAAATGCAGAACGGAACACCGGGAAGTTTCCTGATATTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACTGTGTCCTCATTTGTTCTTGATTGTGAAATTGTTGCATATGATCATGCAAATAAAAAAATTCTTCCTTTCCAGGTGCTTAGTACTCGGACACGCAAAAATGTAGCTGTGAGTGACGTGAAGGTTGATGTATGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAAACCTGAAAATTCGAAGAGAGTTGTGAGGGATTAA 714 0.3908 MFSIWCAWWMLIDMESGKDSGKKKKNHIKSLLLASTDSEPLYLILYTEEHSKPTHEIQSLLEKAIKIVKQAYSVLPDYDRIVPARNFTPGVPVGPMLSKAVASVSEALNRFQGIELTCEYKYDGERAQIHYMENGSVEVYSRNAERNTGKFPDIVAAVSRLKKTTVSSFVLDCEIVAYDHANKKILPFQVLSTRTRKNVAVSDVKVDVCIFAFDLLYLNGQALLQEKPENSKRVVRD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02093 237 Gene3D - 45 97 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car07g02093 237 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 119 127 IPR016059 GO:0003909
Car07g02093 237 Gene3D - 105 123 - -
Car07g02093 237 Pfam ATP dependent DNA ligase domain 95 234 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car07g02093 237 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 13 234 - -
Car07g02093 237 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 12 84 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car07g02093 237 Gene3D DNA ligase/mRNA capping enzyme 124 233 - -
Car07g02093 237 PANTHER DNA LIGASE 1 13 234 - -
Car07g02093 237 CDD Adenylation_DNA_ligase_I_Euk 86 226 - -
Car07g02093 237 ProSiteProfiles ATP-dependent DNA ligase family profile. 201 237 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car07g02093 237 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 87 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02093 Car-Chr7 25897420 25901017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02093 12 226 Core DNA Replication Machinery Family AT1G08130 58.566 2.11e-95 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02093 K10747 - gmx:100783155 315.079