Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02030 ATGAAGAGATCAAGAGATGAAGAGCTCAAAATTGAACCGACCGTGGATTCGCATAGTAATCGTGACCTCACTGCTGATGATCCGGATCCAGAACTTGACAGAGGTTTGATGAGTGCAGATACGgagcagagaagagatgagaaggaagaggagagTCATAGAGATATGTATAGTGAAGCACTTGCTTTCCTTGAAAAAGTCGAGGAGAAGTTAGGAAATCCTGAGGATTACCAAAAGCTTTTGGAGTGCCTACATACCTACAGAATAGAAACAATTACCCGACAAGAATTACAGGCATCGGTGGGCGATTTATTGGCAGAACATGCCGATCTTTTGGAGGGATTTAATGATTTTTTGACACAATGTGATGACAATGAAGGATTCCTCGATGGTGTCTTGAATAAAAGTTTGTATGAGCATCATGTGCTTGTTTACCATAAAAAAGTGAAGAAGACATTAAGTGATCCTGAGGATTTTGAGAAATTTTTGAAGTGCCTATATACCTACAACAGAGAATTAATTACCCGAGAGGAATTGCATGCTTTGGTGGAAGATTTACTGGGAAAACATGTAGATCTTATGGAGGGTTTTAATGAGTTTTTGACACAATGTGAGGAAATAGAGAATGATGCACGAGAGCTTTCTGAAAAACCAACGGATATAGTTGATGATGTTGAAGGGTCATCAAATCTTTCTTGA 699 0.3705 MKRSRDEELKIEPTVDSHSNRDLTADDPDPELDRGLMSADTEQRRDEKEEESHRDMYSEALAFLEKVEEKLGNPEDYQKLLECLHTYRIETITRQELQASVGDLLAEHADLLEGFNDFLTQCDDNEGFLDGVLNKSLYEHHVLVYHKKVKKTLSDPEDFEKFLKCLYTYNRELITREELHALVEDLLGKHVDLMEGFNEFLTQCEEIENDARELSEKPTDIVDDVEGSSNLS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02030 232 SUPERFAMILY PAH2 domain 56 122 IPR036600 GO:0006355
Car07g02030 232 PANTHER SIN3B-RELATED 144 208 IPR039774 GO:0003714
Car07g02030 232 PANTHER SIN3B-RELATED 52 138 IPR039774 GO:0003714
Car07g02030 232 ProSiteProfiles PAH domain profile. 48 122 IPR003822 GO:0006355
Car07g02030 232 MobiDBLite consensus disorder prediction 212 232 - -
Car07g02030 232 Pfam Paired amphipathic helix repeat 75 119 IPR003822 GO:0006355
Car07g02030 232 Pfam Paired amphipathic helix repeat 158 201 IPR003822 GO:0006355
Car07g02030 232 SUPERFAMILY PAH2 domain 133 202 IPR036600 GO:0006355
Car07g02030 232 Gene3D Paired amphipathic helix 137 206 IPR036600 GO:0006355
Car07g02030 232 Gene3D Paired amphipathic helix 51 124 IPR036600 GO:0006355
Car07g02030 232 Coils Coil 197 217 - -
Car07g02030 232 MobiDBLite consensus disorder prediction 1 55 - -
Car07g02030 232 ProSiteProfiles PAH domain profile. 134 204 IPR003822 GO:0006355
Car07g02030 232 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 144 208 - -
Car07g02030 232 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 52 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02030 Car-Chr7 24227363 24231032 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car07g02030 PAH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02030 K11644 - cam:101494012 463.381