Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02029 ATGAAGAGGTCTAGAGATGATGTTTACATGAGTTCACAACTCAAACGCCCCATGCTGTCTTCTAGAGAAGAACCCTCGAGGCAACCCCAGGTGATGAGTGATGGTCAGAAACTAACCACAAACGACGCCTTATCATATCTAAAGGCAGTAAGAGAAATGTTTCAAGATAACAAGGAAAAGTATGATGACTTTTTGGAAGTTATGAAGGATTTCAAGGCCCAAAGGTATGTTCATGGTGTACTTCATTCTCATTCTTTTGAGCTGTTCAAAGGCCATAAAGATTTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGCAATCACACTTCCATTGGAAGAAGATGAACAGCCTCCACAGAAGAAGCCCGTTGAATTTGAAGAAGCTATCAATTTTGTGGGCAAGATTAAGATTCGTTTTCAAGGCAATGATCGTGTTTACAAGACTTTTTTGGACATATTAAATATGTACAGAAAAGAAACCAAGAATATCAACCAGGTTTACCAAGAGGTTTCTGCCCTCTTCCAAGACCATGAGGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAACAGCCTCTACTCACTTTGCTTCTGCTCGAAATTCTCTCCTTCGTGATAGGAGTTCTGCAATGACAACAGTGAGGCAAATGCATGTTGACAAGAGAGAAAGGACAACAGCTTTGCACGGTGACCGTGATCTCAGCGTTAATCATCCTGATCCAGAACTTGACAGAGGTTTGATGAGGCCTGATAAGgagcagagaagacgcgagagagaaaaggaccgtagagaagagagagacaggagagaacgggaaagggatgatagagaTTATGATAATAATGATGGTAGTCGAGAGCGTTTATCCCACAAGGGAAAATCTGGTCATAGAGCTATAGACCCTGGTACTGAGCCATTGCATGATGCAGATGAAAAGTTTGACATGCACCCTATCGCGTCCGCTTGCGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTAAGCAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATCACCCGGCAAGAACTACTTGCATTGGTGGGCGATTTACTGGGAAAATATACTGATATTATGGATGGGTTTGATGATTTTGTGACACAATGTGAAAAGAATGGTAATGTTCAAGCTATTTTTTCAATTTCTACAAAATTTAAATCCTTGTGGAATGAAggacatggaccgaaaccagtgaaggtagaggacaaggacagggaccgtgacagggaTGATGGGGTGAAAGCAAGGGATCAAAGAGACAAATCCACTGGAATTGCCAATAAGGATGTTTCTATTCCTAAGGTGTCGTCTCTAAGCAAAGACAAGTATGTAGGAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAACAATGCACTCCCAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGTTAGTTAGCCAGAGGACTGAACTTGGTGCCAAAGTATTGAATGATCACTGGGTTTCTGTCACATCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATATGACAAATCAGAGAGTTGAAGAGATCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAACACTTAACAGCCCTAAATCTTAGGTGCATTGAAAGATTGTATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGTGCTGATTTTAACAAAGTTTGGGCTGAAATATATGCAAAGAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATACGAAAAACTTGAGCACTAAAGCCTTACTGGGAGAGATCAAAGAAATTAGCGAGAAGAAAAAAAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTATTCCTAACTTGGAATTTGAGTATCCTGATCAAGAAATTCACGAAGATTTGTATCAGCTCATCAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAATTAGATAAAGTCATGAAGATTTGGACAACATTTTTAGAACCCATGTTTGGTGTTCCTTCTCGACTGTGTATTCCCGAAGATACAGAAGATGCTGTCAAGGCTAAGAATGATTCTGCAAAAATTGGCACTGCAAGTATTGCCGAGGATGATGGTAGTCCTGACGGTGGTGCTACCGTAATGAATCCTAATAATTCAAACACTACTAGTAATGGGGATGCCAGTGTTCCATTTGAACAGTCAAATGCTTGCAAAGAATGGCAAACAAATGGGATTGGTGGGGTTAAAGAGCATGATTGTCTCGAATTAGACCACTCTGCTCCTAAGACTGAAACTTTGGGAAGTTGTACACAGCAAGGTAAAATTCAGATAAGTGCATCCATTGCTGATGAAGTATCAAGAGTCAATAAGCAAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTCTCACTGTCCTCTGGAATGGAGCAAAGTAATGGAAGAACAAACATGGATAATGCATCAGGACTTACTGCAACTCCGTCTAGACCTGCTCATGTTTCTGGTGAGGGAGGGCTTGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACCAGTTACATCCGCAAATGGGGCTACCACTGAAGACACCAAAGTTCACAGATGTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGTGCATAAAAGAAAAGGTGGTAATACCAGTCAACAATACCAAAATAGTCATGGGGAACAAGTTTGTGGTGAAGCTGGAGGAGAAAATGATGCTGACAATCAAAGTGATGGAAGTCCTCATAGATCATCAGACAGTGAAAATGCGTCTGAAAATGGTGATGTTTCTGGTACAGAGTCTGCTGATGGTGAGGAATGTTCTCGGGAAGAACATGAAGAGGATGGGGATCATGAACATGGTAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGACTGATGCCAATGATGTTGAAGGAGATGGATCCTCATTGCCATATTCAGAATGCTTTCTTCTCACTGTTAAGCCTCTGGTAAAACATGTTGGCCCAGTGCTGCATGGGAAAGAAAAGAACGTTCAAATTTTTTATGGAAATGACTCCTTTTATGTGCTATTTAGACTTCATCAGACATTGTATGAGAGAATACGATCAGCAAAGATTAACTCATCTTCTGCTGAAAAGAAATGGAGAGCTTCAAATGATACAAGTTCTACTGATCAATATGGCAGGTTCATGAATTCTCTTTACAGTTTACTGGATGGTTCTTCTGATAATTCAAAATTTGAGGACGATTGTCGAGCTATTATTGGAACTCAGTCATACGTCTTGTTCACGTTAGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGCCACTGATGAGATGGATAACAAACTTCTTCAACTATATGCATACGAACAATCAAGAAAATCTGGAAGCTTTGTTGATGTAGTCTATCATGAAAATGCCCGTGTTCTTCTTCATGACGAGAACATATATCGCATTGAGTGTTCCCCTACTCGAATGTCTATTCAGTTGATGGACTATGGACACGATAAGCCTGAAGTGACTGCTGTGTCAATAGATCCTAATTTTGCAACCTATCTGTACAGTGATTTCCTATCTGTTGTCCCAGACAAAAAGGAGAAGTCAGGAATTTTGTTAAAAAGGAATAAAAATAAATATGCCTTGAGTGATGAAGTTTCAAACCAGGTCATGGATGGAGTACAAGTCATCAATGGTTTGGAGTGTAAGATTGCATGCAATTCATCCAAGGTTTCATACAGTACAGCGGTTCTGCAAATTATTTTCCATCAAATGATTGTATCCTATTTGAGCCACATATGTAATTTCGGTCATTCATCAGTGGCACCGACACCAGATGGCGCGATGACATGGCATCCAAGAAATGGAGAAAAATATGTTTTTCTGAGATGTAACTTTCTTGCGTCCTTCACATCTTCAACCCTTGCAACCAAATAA 4317 0.3845 MKRSRDDVYMSSQLKRPMLSSREEPSRQPQVMSDGQKLTTNDALSYLKAVREMFQDNKEKYDDFLEVMKDFKAQRYVHGVLHSHSFELFKGHKDLILGFNTFLPKGYAITLPLEEDEQPPQKKPVEFEEAINFVGKIKIRFQGNDRVYKTFLDILNMYRKETKNINQVYQEVSALFQDHEDLLEEFTHFLPDTSGTASTHFASARNSLLRDRSSAMTTVRQMHVDKRERTTALHGDRDLSVNHPDPELDRGLMRPDKEQRRREREKDRREERDRRERERDDRDYDNNDGSRERLSHKGKSGHRAIDPGTEPLHDADEKFDMHPIASACEDKSSLKSMCSPVLAFLEKVKEKLSNPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYTDIMDGFDDFVTQCEKNGNVQAIFSISTKFKSLWNEGHGPKPVKVEDKDRDRDRDDGVKARDQRDKSTGIANKDVSIPKVSSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPLVSQRTELGAKVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNMTNQRVEEILEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKNLSTKALLGEIKEISEKKKKEDDVLLAIAAGNRRPIIPNLEFEYPDQEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMFGVPSRLCIPEDTEDAVKAKNDSAKIGTASIAEDDGSPDGGATVMNPNNSNTTSNGDASVPFEQSNACKEWQTNGIGGVKEHDCLELDHSAPKTETLGSCTQQGKIQISASIADEVSRVNKQDHSIEQLVNANVSLSSGMEQSNGRTNMDNASGLTATPSRPAHVSGEGGLDLPSSEGADSTRPVTSANGATTEDTKVHRCHKESVGHFKSEREEGELSPNGDFEEDNFAVYANAGLEAVHKRKGGNTSQQYQNSHGEQVCGEAGGENDADNQSDGSPHRSSDSENASENGDVSGTESADGEECSREEHEEDGDHEHGNKAESEGEAEGMTDANDVEGDGSSLPYSECFLLTVKPLVKHVGPVLHGKEKNVQIFYGNDSFYVLFRLHQTLYERIRSAKINSSSAEKKWRASNDTSSTDQYGRFMNSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKSGSFVDVVYHENARVLLHDENIYRIECSPTRMSIQLMDYGHDKPEVTAVSIDPNFATYLYSDFLSVVPDKKEKSGILLKRNKNKYALSDEVSNQVMDGVQVINGLECKIACNSSKVSYSTAVLQIIFHQMIVSYLSHICNFGHSSVAPTPDGAMTWHPRNGEKYVFLRCNFLASFTSSTLATK 1438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02029 1438 SUPERFAMILY PAH2 domain 339 403 IPR036600 GO:0006355
Car07g02029 1438 MobiDBLite consensus disorder prediction 956 979 - -
Car07g02029 1438 SUPERFAMILY PAH2 domain 36 107 IPR036600 GO:0006355
Car07g02029 1438 MobiDBLite consensus disorder prediction 212 316 - -
Car07g02029 1438 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Car07g02029 1438 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1383 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 426 460 - -
Car07g02029 1438 Pfam Sin3 family co-repressor 491 582 IPR013194 -
Car07g02029 1438 MobiDBLite consensus disorder prediction 429 458 - -
Car07g02029 1438 Coils Coil 562 582 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 14 35 - -
Car07g02029 1438 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Car07g02029 1438 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Car07g02029 1438 MobiDBLite consensus disorder prediction 803 822 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 1060 1088 - -
Car07g02029 1438 PANTHER SIN3B-RELATED 1 1383 IPR039774 GO:0003714
Car07g02029 1438 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Car07g02029 1438 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Car07g02029 1438 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Car07g02029 1438 MobiDBLite consensus disorder prediction 1040 1056 - -
Car07g02029 1438 SMART hdac_interact2seq4b 489 589 IPR013194 -
Car07g02029 1438 MobiDBLite consensus disorder prediction 1 35 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 221 316 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 899 986 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 940 955 - -
Car07g02029 1438 Pfam C-terminal domain of Sin3a protein 1135 1374 IPR031693 -
Car07g02029 1438 MobiDBLite consensus disorder prediction 1003 1100 - -
Car07g02029 1438 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Car07g02029 1438 Pfam Paired amphipathic helix repeat 356 399 IPR003822 GO:0006355
Car07g02029 1438 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Car07g02029 1438 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Car07g02029 1438 MobiDBLite consensus disorder prediction 899 921 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 789 822 - -
Car07g02029 1438 MobiDBLite consensus disorder prediction 1005 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02029 Car-Chr7 24185888 24198128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02029 26 119 WRKY Transcription Factor Family AT4G12020 47.423 3.21e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car07g02029 Sin3a_C 1.5e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02029 K11644 - gmx:100781798 2006.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02029 07 24185888 24198128 Car07g02029 07 24185888 24198128 ECH
Car02g00651 02 8332197 8343993 Car07g02029 07 24185888 24198128 PCT