Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02026 ATGGGGCGTGCAAAAGTAGCGATAAAATACATCAATAATGAAAAAGTTCGCAAAATAACTTTTATGAATAGAAAAAAAGGATTAACAAATAAAGTTTCTGATTTTTCTACTAAATCTGGAGCCAAAGCTTGCTTGATTATGTATGATGGTGATGGTAATGTTGCGCCAACAATATGGCCAGAAAACCCTACACTGGTAAACTCAATGCTACAAGAATATGAGAATCAAAAGATTGAAGCATCTCCTAAGATTTTTGATATAAAAAATTACTTCAAAATTAAGAAGGAAATAGTTGAAGCTGAAATTTTAAAAGTGAAAAAAGCTATATTAAGGAACAAGTTTCCAACTTGGGATCCATCTTTCAATAACATGCAAGTGGAGCATCTTACGGCTTTCATGGAAGCTATAAATGCTAAGGTTCAAGATTGTAATGAAAGAATAAACATGATGAAAAATATCCAAGAAATTGAAACTAATTTCTTGCATAATACGTCTCACATGCAAAATATGGTTCCAGAGAGTCTTGACTCCTCAAATTCAAGTCAAATCAATGTCATTCAAAGCATCCCTCAAATGGAACAATACATCCATGACCCTATGGAATTACCACTAGATGATGTTTATGAGATGGTGAATTTCACTAATCATGTTGATTTGCCTCCAAATTCATCAACAAACCAACTTTGTCAACTTGTAGAGTGTGATAATTTAGAGGTTAAGCCTATTAATGTTTGTCAACTTGTGGAGTGTGATGATTTAGAGGTTAAGCCTATCAATGAACGAGGCAATCAATTTGCTGATGTTGATGATTGGACCAATCAACTTGACGATGATATTTGGAATTGGATTCGTCAACCTGATCAGTTTTCTTGGAATGATATTTCCTTTTTACCTCCAAGCGAGCATGAAAGTGCAAGTTTGAATGCATTGACCCAACAAAAATATGGTTTTTAA 954 0.3354 MGRAKVAIKYINNEKVRKITFMNRKKGLTNKVSDFSTKSGAKACLIMYDGDGNVAPTIWPENPTLVNSMLQEYENQKIEASPKIFDIKNYFKIKKEIVEAEILKVKKAILRNKFPTWDPSFNNMQVEHLTAFMEAINAKVQDCNERINMMKNIQEIETNFLHNTSHMQNMVPESLDSSNSSQINVIQSIPQMEQYIHDPMELPLDDVYEMVNFTNHVDLPPNSSTNQLCQLVECDNLEVKPINVCQLVECDDLEVKPINERGNQFADVDDWTNQLDDDIWNWIRQPDQFSWNDISFLPPSEHESASLNALTQQKYGF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02026 317 PANTHER MADS BOX PROTEIN 3 246 - -
Car07g02026 317 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Car07g02026 317 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Car07g02026 317 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Car07g02026 317 CDD MADS_SRF_like 2 74 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car07g02026 317 PANTHER PROTEIN, PUTATIVE-RELATED 3 246 - -
Car07g02026 317 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g02026 317 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02026 Car-Chr7 24100186 24101139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02026 1 146 Type I MADS-box Gene Family AT5G55690 31.788 3.21e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car07g02026 SRF-TF 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02026 - - cam:101495285 623.239