Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02014 ATGAATGTTACTCGTTCTACTTTGATGCTCCTCCATCTTCAAAACTCACCAATTCGTTACAAATTCTTCTTCTCTCACTTCAACAATGCTCTTCGCAATCCAACCTCGTCTTCTTCTCTATTCAATCTCAAACCAACGCGGTTCTTTTCTCTATGCCAGACGCAGACACGACCCTTTTGTGTAAGTGCCGTTTCATCCGAAGATTCTAAAGGCCGAAACACTTTCTTTGCTGAAGATAACGTTGCTTGGAGTTCACTTGGTCTTTCTGACACCCTTTCTCGTGCTCTCTCTAATATTGGTCTTAAAACACCCTCTCTTGTTCAGGCGTCTTCCATTCCATCTGTGTTGTCAGGGAAGGATGTGATTATTGCTGCGGAGACTGGAAGTGGTAAGACTTATAGTTATCTACTTCCTCTCATTGATAAGCTGAGGGACACACAGGAACAGTCTTTAGATGCCGTGTCTGATAAAGAAGTCTCTCCGCCGGGCAGAAAAGTTCTGCTTGTGCTTTGTCCGAATGTGCAATTGTGTGAGCAGGTAGTTAGGATGGCTAATAGTCTCTGTAGAGACGATAGCAAAACCATAGTTCGTGCCGTAGCCATTTGTGGCCGACAGGGATGGCCGATTCGGGAACCTGATATCATTGTGACGACACCTGCTGCTCTTCTCAATCATGTTGACATTGATAAAACCCGCTGCATGGAATTTATGCATGGTGTTAAATATGTGGTGTTTGATGAAGCTGACATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTAATCTGCCTGATAAACTTGCTCCGCTATGATGAAAAACTCTTGTCTCAATCAAAAACATCAGTTGCAGAGTTGCCACTGAAACTGGAATCTCCTTTATCATCACATGATAATGCTCTGGAAGCTGATGCTTTGGAAGGTGAAGAGGAATTTCCAACTGAAGCCTCCTCAGGCGAAGAGGATGATGATAACAAGGACATTGCCAGCATTAATAAAGAAGCTGAATCTGCCAAGCAAAGAAGAAGAGAGTGGAGGAGAGCAAGGAAAATTTTTGAGCGTAGTAAACAATATGTTTTTGTTGCAGCTACACTTCCGGTAAATGGAAAGAAAACAGCTGGAGCATTATTGAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGACTGTTGATTCACAGGTGGGGGAACTCGTAAGGGCTGTGAAGCACAGTTTAAAATCTGAAGATTTGGATGATGCTGGCGGCATTCATAGAACAATGGTGTTTGCCAACACTGTTGAGGCGGTCGAAGCTGTGGCAAAGATTTTGTACCATGCTGGGATTGAATCTTTACGTTATCATAAGAATTGCACATTGGAAGAGAGAGCACAGACCTTAGTTGATTTCCACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAATGTCTTGCATGTTATTCAGGCAGATTTTGCAACTTCTGCTGTAGATTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGTCAAATCGGACTAGTTACTAGCATGTATACCGAGTCCAACAGAGAGCTTGTACAAGCAGTTCGTCAAGCAGAGGAACTTGGTCAACCTGTGGAGACCGCATTTAGCCGGAAAAGAAGCTTCCGTAACAAGATAAAAAAGAGAGCAAGTGCTAACAAAGTCAGAGATTCTGCAACCATGGAAGAGAGTTTTCATGCATGA 1776 0.4313 MNVTRSTLMLLHLQNSPIRYKFFFSHFNNALRNPTSSSSLFNLKPTRFFSLCQTQTRPFCVSAVSSEDSKGRNTFFAEDNVAWSSLGLSDTLSRALSNIGLKTPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLLPLIDKLRDTQEQSLDAVSDKEVSPPGRKVLLVLCPNVQLCEQVVRMANSLCRDDSKTIVRAVAICGRQGWPIREPDIIVTTPAALLNHVDIDKTRCMEFMHGVKYVVFDEADMLLCGSFQNKVICLINLLRYDEKLLSQSKTSVAELPLKLESPLSSHDNALEADALEGEEEFPTEASSGEEDDDNKDIASINKEAESAKQRRREWRRARKIFERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDSQVGELVRAVKHSLKSEDLDDAGGIHRTMVFANTVEAVEAVAKILYHAGIESLRYHKNCTLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRIGRTARAGQIGLVTSMYTESNRELVQAVRQAEELGQPVETAFSRKRSFRNKIKKRASANKVRDSATMEESFHA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02014 591 CDD SF2_C_DEAD 397 535 - -
Car07g02014 591 MobiDBLite consensus disorder prediction 575 591 - -
Car07g02014 591 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 50 564 - -
Car07g02014 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 381 IPR014001 -
Car07g02014 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 538 IPR027417 -
Car07g02014 591 MobiDBLite consensus disorder prediction 304 326 - -
Car07g02014 591 MobiDBLite consensus disorder prediction 571 591 - -
Car07g02014 591 Gene3D - 62 379 IPR027417 -
Car07g02014 591 Coils Coil 326 346 - -
Car07g02014 591 SMART helicmild6 446 526 IPR001650 -
Car07g02014 591 Pfam Helicase conserved C-terminal domain 433 526 IPR001650 -
Car07g02014 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Car07g02014 591 SMART ultradead3 100 400 IPR014001 -
Car07g02014 591 Pfam DEAD/DEAH box helicase 107 272 IPR011545 GO:0003676|GO:0005524
Car07g02014 591 Gene3D - 399 591 IPR027417 -
Car07g02014 591 CDD DEADc 92 279 - -
Car07g02014 591 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 564 - -
Car07g02014 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 567 IPR001650 -
Car07g02014 591 MobiDBLite consensus disorder prediction 304 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02014 Car-Chr7 23877857 23885212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02014 340 559 Eukaryotic Initiation Factors Gene Family AT5G11200 26.953 1.50e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g02014 - - gmx:100780518 841.262