LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g01992	ATGGATGAAATGGTTTGTAGTACTAGTTGTAGTTCTGAGTGGAGTAGAGAGGAAGATATAGCATTTGAAAATGCATTGGCAATTTATCCAGAAAATGATGTCAATCGATGGGAGAAAATTGCAGCCGATGTTCCAGGGAAAACTTTACAAGAGATTAAATATCACTATGAGGTTTTGGTTTATGATATTAACCTCATTGAATCTGGTTTTGTCATTCTGCCGTGTTATAAGCTTTTTCCAGAGAGGTCCAAGAATCCTGCTGCTGGCAAAAAAGAATCTAAGGGTTCAAAATATGATCATGAACGACGCAAGGGTATTCCTTGGACAGAAGAGGAACACAAGTTATTTATTGAAGGCTTACATAAGTATGGACAGGGCAACTGGCGAGGTATATCAAGGAACTATGTGGTGACGAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATACTATCTTCGTTTGAAGTCAATGAATGAGACGAAAAAAAGAAGGCGATCCAGCATACACGATATCACCCATGTGCAAAACGGAGAAATTTCAGCACCTCAAGGACCAACTATCGGTCAAGCAAGCGATTCTCCAGCCACTTCAACCCAAACTGCTGAAATATATGCTGCTCCTGTGATCGGACAACCAATGGGAGGACCCATTGTATATGCAATTGGCACCCCAGTGAATCCTATAGAAGGACCTCCTGTATCTGCAATTGGCACCCCGGTGAATCTTCCTGCTCCTGGACACATGAGCAATTTGCACCCCATTGAATATTCCTGGACAGATGACTTATGCGTTTGGGCCGGTTCCGGGACAGTTATTCCAGTTGAACCAAGGAACTTGGGTCCTATGCCATATCCCATGCAACATCCATATACTCACTCATGA	885	0.4282	MDEMVCSTSCSSEWSREEDIAFENALAIYPENDVNRWEKIAADVPGKTLQEIKYHYEVLVYDINLIESGFVILPCYKLFPERSKNPAAGKKESKGSKYDHERRKGIPWTEEEHKLFIEGLHKYGQGNWRGISRNYVVTRTPTQVASHAQKYYLRLKSMNETKKRRRSSIHDITHVQNGEISAPQGPTIGQASDSPATSTQTAEIYAAPVIGQPMGGPIVYAIGTPVNPIEGPPVSAIGTPVNLPAPGHMSNLHPIEYSWTDDLCVWAGSGTVIPVEPRNLGPMPYPMQHPYTHS	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g01992	294	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	100	156	IPR017930	-
	Car07g01992	294	PANTHER	HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED	4	227	-	-
	Car07g01992	294	PANTHER	TRANSCRIPTION FACTOR KUA1	4	227	-	-
	Car07g01992	294	Gene3D	-	5	72	-	-
	Car07g01992	294	ProSiteProfiles	SANT domain profile.	108	156	IPR017884	-
	Car07g01992	294	SUPERFAMILY	Homeodomain-like	8	59	IPR009057	-
	Car07g01992	294	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	104	154	IPR006447	GO:0003677
	Car07g01992	294	CDD	SANT	13	60	IPR001005	-
	Car07g01992	294	ProSiteProfiles	Myb-like domain profile.	100	152	IPR001005	-
	Car07g01992	294	Pfam	Myb-like DNA-binding domain	12	57	IPR001005	-
	Car07g01992	294	Pfam	Myb-like DNA-binding domain	107	151	IPR001005	-
	Car07g01992	294	ProSiteProfiles	Myb-like domain profile.	12	60	IPR001005	-
	Car07g01992	294	CDD	SANT	107	151	IPR001005	-
	Car07g01992	294	SUPERFAMILY	Homeodomain-like	102	157	IPR009057	-
	Car07g01992	294	Gene3D	-	106	158	-	-
	Car07g01992	294	ProSiteProfiles	SANT domain profile.	9	64	IPR017884	-
	Car07g01992	294	SMART	sant	104	154	IPR001005	-
	Car07g01992	294	SMART	sant	10	62	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g01992	Car-Chr7	23334521	23336757	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Car07g01992		Myb_DNA-binding	9.3e-08	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g01992	-		-	gmx:100819797	298.901