Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01982 ATGACCCCTGCAATTGTTTTCATCATAGTTATTTTAGCTATTGTGTTTTTCATCACTGGTATCCTTCAATTACTTGTTAGATTTATCATAAGAAAAAGGTCATCTTCAACAGTTTCTCAATCCAATAACTACCCTCAAATATCTGAATCTGATCCTTACCAAAGACAGTTACAACAACTCTTCAATCTCCATGATTCAGGCTTAGATCAAGCTTTCATTGATGCTCTACCACTTTTCCTTTACAAAGAGATAATAGGTTTGAAAGAGCCATTTGATTGTGCTGTTTGTCTTTGCCAATTCACAGAACAAGACATGTTGAGATTGTTGCCACTTTGTAACCATGCTTTTCATGTTGATTGTATAGACACATGGCTACTTTCTAATTCAACTTGTCCTCTTTGTAGAGGAAGTCTTTATGAACATGGATTTGCCTTTGAAAATCCTGTTTTTTATGACTTTGAGAGTTTAAGGGAAGAAACTGGTGTTTCTTGTAGTGTTGTTGGTGATGCTGGTTCTGTTAATAAGCATGCAGAAAATCATATAATGAGTGGTAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGCTCAAATAATGCTGAAGGAGAGAGTAGTAATAGTAATAGTACAACTTGTACAAGTGTTGTTGATGTTAGAAGATGCTATTCAATGGGGTCATACAAATATGTTGTTGATGATTCTGATTTGGTTGTGGCTTTGTGTCCTAATAGAGGTGAGGAAGTAGGCACAAGTGTTAGTATGAGACAACAATTGAAAGGAGGGTTTGTTCCAAATGAGAATTCTTCTATTGATGGTGGTGATGTTGAAGGGAAAAGAATCAATATTGCTAGGAAAGGTGAAAGCTTTTCTATTTCTAAGATATGGTTATGGTCTAGGAAGGATAAGGTATCAAGTTCATCATCACAATCACATTTGGTTAATTCTAATGTCAATTCAACTTTGCCATGGATGAATAGAGAACTCAAGGAAGCAACTTAG 1002 0.3523 MTPAIVFIIVILAIVFFITGILQLLVRFIIRKRSSSTVSQSNNYPQISESDPYQRQLQQLFNLHDSGLDQAFIDALPLFLYKEIIGLKEPFDCAVCLCQFTEQDMLRLLPLCNHAFHVDCIDTWLLSNSTCPLCRGSLYEHGFAFENPVFYDFESLREETGVSCSVVGDAGSVNKHAENHIMSGKRVFSVRLGKFRSSNNAEGESSNSNSTTCTSVVDVRRCYSMGSYKYVVDDSDLVVALCPNRGEEVGTSVSMRQQLKGGFVPNENSSIDGGDVEGKRINIARKGESFSISKIWLWSRKDKVSSSSSQSHLVNSNVNSTLPWMNRELKEAT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01982 333 SMART ring_2 93 134 IPR001841 -
Car07g01982 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 322 - -
Car07g01982 333 CDD RING-H2_PA-TM-RING 92 135 - -
Car07g01982 333 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Car07g01982 333 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 322 - -
Car07g01982 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 142 IPR013083 -
Car07g01982 333 Pfam Ring finger domain 92 135 IPR001841 -
Car07g01982 333 SUPERFAMILY RING/U-box 72 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01982 Car-Chr7 23214810 23216554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01982 20 310 C3H Transcription Factor Family AT2G18650 39.688 2.26e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01982 - - gmx:100818135 447.973