Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01978 ATGACATCAAGGTCATATGCTAATCTCTTAGACTTAGCTGGTGGAGACTTGTTTGATATTCCTCACACTCCAAGAACTCTTCCAAGGGTTATGACTGTTCCTGGAATTATTTCTGATCTTGATGGTTGTAATGATGGTGATTCAGATGTTAGTTCTTCTGGATGTCGGGAGCGTAAAATCATTGTGGCAAACATGTTGCCGCTGCAGGCTAAAAGAGATATAGATACTGCTAAATGGTGTTTCAGTTGGGATGAGGATTCAATTCTATTACAATTAAAAGATGGGTTTTCTTCTGATATTGAGGTAATCTATGTGGGTTCCCTCAAAGTTGAGATAGATGCTAGTGAGCAGGATGAAGTTGCTCAGAGATTATTGGATGACTTTAATTGTGTGCCCACCTTTCTTCCCCATGATCTGCAGAAAAAGTTCTATCTTGGTTTTTGTAAGCAGCAGCTCTGGCCTCTGTTTCATTATATGCTACCCATATGCTCAGATCATGGTGACCGCTTTGACCGCTCTCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGATAAAGTCATGGAAGTGATTAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTGATGGTTTTGCCTACTTTCTTGAGGAAACGATTCAATCGAGTTAAACTTGGGTTCTTTCTTCATAGTCCTTTCCCCTCATCTGAAATTTACCGGACTTTGCCAGTAAGGGATGAAATTTTGAAGGGATTGTTGAATTCCGATTTAATTGGTTTTCATACATTTGATTATGCCCGCCACTTTCTTTCTTGTTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGAGAGGACATATTGGACTTGATTACTTTGGCCGCACTATATTTATCAAAATTTTGCCTGTAGGCATTCACATGGGTAGGCTTGACTCTGTATTAAATCTTCCTTCTACATCCTCTAAACTAAAAGAGATTCAGGAAGAGTTTAAGGGTAAGAAAGTTATTCTAGGTGTTGACGACATGGATATTTTTAAGGGTATCAATCTGAAATTTCTTGCTGTGGAGCAGCTGCTGCAGCAGAATCCAGATTTGCAGGGAGAAGTTGTCCTAGTTCAAATTGTAAATCCTGCTAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAGAAGGAAGCATATTTAATTGCTGAGAGAATCAATAATACTTACGGCTCAAAGCATTATCAGCCAGTCATTATCATTGACCGCCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTAGCTGAGTGTTGCATTGTCAATGCTGTGAGGGATGGAATGAACTTAGTCCCCTACAAATATATTGTCTGCAGACAGGGAACTGCAAAGATGGATGAAGCTATGGGTAGAAAAAGCGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGCTGTTCACCTTCTCTGAGTGGGGCCATCAGGGTCAATCCCTGGGATATAGATGCAGTTGCCGATGCTCTGAATTTGGCCCTCACTATGAGAGATTCAGAGAAGAAGTTGCGCCATGAGAAACACTACCGATATGTCAGTTCTCATGATGTGGCATATTGGGCACGCAGTTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTATACTAAAAGGTGCTGGGGAATTGGTTTGGGCTTGGGGTTCAGAGTTATTTCTCTTTCTCATGGTTTTCGGAAGTTGTCCATTGACCATATTGTATCAGCATACAAAAGAACCAGTAGAAGGGCCATCTTTCTTGATTATGACGGCACTGTTGTACCACAATCTTCTATTAATAAAACCCCTAGCCCTGAAGTCATATCTGTGCTTAACGCTCTGTGTAATGATACCAAGAATGTCGTATTCATTGTTAGTGGTAGGGCAAGAGATTCACTGAGtgaatggtttacctcatgcaaaatgctggggcttgcagctgaacatgggtactttttaaggtggaatagtgattccgaatgggaaaccagtcacttgtctgcagaccttgattggaaacagatagtggtgccagtcatgcaatcatatacagaagcaactgatggatctaatattgaaattaaggaaagtgctttggtgtggcatcatcaagatgccgaccctgattttggttcctgccaagccaaagaattgttggatcacttggaaagtgttcttgctaatgaaccagcaattgttaagagaggccagcatattgttgaagttaagccacagggagtaaccaaaggtttggtagctgaaaaagttcttttgaatatggttaatggcggtaacccaccagatttcgtgatgtgcattggagatgatagatctgatgaagacatgtttgaaagcattttgagtacagtctcatgcccatcgttaccatcagctccagagattttcgcctgcactgtaggtaggaagcctagcaaggccaagtattttcttgatgatactactgatgttgtaaagttgcttcaagGCCTTGCCGCCTCATCAAATCCAAAGCCCAGACATCTTGCGCAATTCCAGGTTTCTTTTGAGAGCACAGTTTCTTAG 2583 0.319 MTSRSYANLLDLAGGDLFDIPHTPRTLPRVMTVPGIISDLDGCNDGDSDVSSSGCRERKIIVANMLPLQAKRDIDTAKWCFSWDEDSILLQLKDGFSSDIEVIYVGSLKVEIDASEQDEVAQRLLDDFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICSDHGDRFDRSLWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILKGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLDSVLNLPSTSSKLKEIQEEFKGKKVILGVDDMDIFKGINLKFLAVEQLLQQNPDLQGEVVLVQIVNPARGSGKDVQEAKKEAYLIAERINNTYGSKHYQPVIIIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAKMDEAMGRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALNLALTMRDSEKKLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVISLSHGFRKLSIDHIVSAYKRTSRRAIFLDYDGTVVPQSSINKTPSPEVISVLNALCNDTKNVVFIVSGRARDSLSEWFTSCKMLGLAAEHGYFLRWNSDSEWETSHLSADLDWKQIVVPVMQSYTEATDGSNIEIKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAIVKRGQHIVEVKPQGVTKGLVAEKVLLNMVNGGNPPDFVMCIGDDRSDEDMFESILSTVSCPSLPSAPEIFACTVGRKPSKAKYFLDDTTDVVKLLQGLAASSNPKPRHLAQFQVSFESTVS 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01978 860 Gene3D Glycogen Phosphorylase B; 52 310 - -
Car07g01978 860 CDD HAD_TPP 591 832 - -
Car07g01978 860 Pfam Glycosyltransferase family 20 58 543 IPR001830 GO:0003824|GO:0005992
Car07g01978 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 591 792 IPR006379 -
Car07g01978 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 547 - -
Car07g01978 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 850 - -
Car07g01978 860 Gene3D - 719 850 IPR023214 -
Car07g01978 860 Gene3D - 589 699 IPR023214 -
Car07g01978 860 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Car07g01978 860 CDD GT20_TPS 58 543 IPR001830 GO:0003824|GO:0005992
Car07g01978 860 TIGRFAM T6PP: trehalose-phosphatase 588 837 IPR003337 GO:0003824|GO:0005992
Car07g01978 860 SUPERFAMILY HAD-like 590 838 IPR036412 -
Car07g01978 860 Gene3D Glycogen Phosphorylase B; 311 527 - -
Car07g01978 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01978 Car-Chr7 23165782 23171277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01978 1 859 Trehalose Biosynthesis Gene Families AT1G23870 75.779 0.0 1380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01978 K16055 - gmx:100775779 1598.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01978 07 23165782 23171277 Car07g01978 07 23165782 23171277 ECH