Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01963 ATGTCACTCTCCTCCACAActtcccacctcactatccttccttcacttccttcAACTTCACCACTTTCTCTCCGATTTTCCTTCACTTTCCGAGAAAAAAGAAACCAAACCACACCTCTCACAACAACCCTGTTAGCTTCACCAAGGACTGCCACTGCTAGATTCTTGGTGAAGTCTCAGGCCACAACTACTCCTGCTTCTTCCGAGGCTGCGAAAGTGACACAAGTGCCTTCTGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTTGATGTTTTGAAATTTGATTCCAGTATTGCTGTCCCTGATGTTAAGGAAGATCAGGTTCTTGTTAGAGTTTTTGCTGCTGCTCTTAACCCTGTTGATGGTAAGAGAAGACAAGGGAAGTTTAAAGCCACTGACTCTCCTCTTCCGACTGTTCCTGGCTATGATGTAGCTGGAGTTGTGGTGAAAGTTGGTAGTGAAGTAAAGGATTTCAAAGTGGGTGATGAAGTGTATGGTGATGTAAATGAGAAAGCACTTGAAGGGCCAAAACAGTTTGGGTCTCTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTAAGAATTTAGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGTTTTTCTGCTGGTAAATCTATTCTTGTTCTTAATGGTTCTGGTGGAGTTGGAAGTTTAGTGATTCAGCTAGCTAAACAAGTTTTCGGAGCTTCAAGAGTTGCTGCCACTGCAAGCACTAGAAATTTGGAGTTGTTGAAAAGTCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGCTATTGGGCAATGTGATAGGGCAGTGAAGGCTATAAAAGAAGGTGGCAGTGTAGTTGCACTTACAGGTGCTGTTACACCACCTGGCTTCAGATTTGTAGTAACTTCCAATGGAGCAGTTCTGAAGAAACTAAACCCTTATTTAGAGAGTGGAAAAGTGAAGCCAATTGTTGATCCCAAAGGCCCATTCCCTTTTGATCAGGTGGTTGAAGCTTTCTCTTACGTTGAAACAAACAGAGCTACTGGAAAGGTTGTTATATACCCCATCCCATGA 1167 0.4156 MSLSSTTSHLTILPSLPSTSPLSLRFSFTFREKRNQTTPLTTTLLASPRTATARFLVKSQATTTPASSEAAKVTQVPSEMKAWVYGEYGGVDVLKFDSSIAVPDVKEDQVLVRVFAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPKNLDFAQAASLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATASTRNLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIVDPKGPFPFDQVVEAFSYVETNRATGKVVIYPIP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01963 388 SMART PKS_ER_names_mod 89 384 IPR020843 GO:0016491
Car07g01963 388 Pfam Alcohol dehydrogenase GroES-like domain 108 170 IPR013154 -
Car07g01963 388 Pfam Zinc-binding dehydrogenase 273 384 - -
Car07g01963 388 SUPERFAMILY GroES-like 77 234 IPR011032 -
Car07g01963 388 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 47 388 - -
Car07g01963 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 325 IPR036291 -
Car07g01963 388 Gene3D - 87 384 - -
Car07g01963 388 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 229 250 IPR002364 GO:0008270|GO:0016491
Car07g01963 388 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 47 388 IPR044626 GO:0016628
Car07g01963 388 CDD MDR_like_2 80 384 - -
Car07g01963 388 Gene3D - 221 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01963 Car-Chr7 22660933 22664200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01963 104 276 Monolignol Biosynthesis Gene Families AT4G39330 25.126 2.10e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01963 K18980 - gmx:100810816 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01963 07 22660933 22664200 Car07g01963 07 22660933 22664200 ECH