Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01957 ATGAGTGGTATGAGAGTTGTTGAATGGCTTAGACCCCTTGTTGAGACCAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGATCCAACTAGGTTTATTGAGTGGATGGGTTGTTGTTGTGGTGGTGGAAACATTGAGCATGTGAAGTTTGAAGAGAAAATGGATGATGAACAATACAACTTGGGTCCCATTTGTAGGGATACCCTATTTTATCATCCAGTTAGAACTAAGAGTTGTGAGGCTCTTGCTAAGTTTCCTTTTTCAATATCTCTCTATTCTAGTGTTCATGGAGAGGTTGCAATATCACAACAACCAAGATGGCTTATCCAGCAGGACTCAATTGGAACTCAAGTTTTGATCCCTATTTTTGGGGGTCTTGTTGAGCTCTTCACTGCAAACCTGATCCCAAAAGATATAAATATGATGGAGTTCATATCAGCACACTTTTGTGTCTCTATAAACCAAGAAGCAATATCTGAACAAAGCTACACCAACAGGAACTTCAATGACCATTACACTTTAACTCCTAGCATTGAAGGACTCTCTAGTGGGTCTAATCCTTCAACTGAACACTCAAAAGGGGAAGATAAAGAAAAACTTGTTAGGGAGCCTCAGAAGGAAGTTTATCATGCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAAAAGAATCAATAAAGGGCTTTTTACTCTAAGGTCTCTAGTCCCAAATATAACCAAGATGGATAGAGCAGCAATTCTAGAAGATGCAATTGAATATATAAAGGAGTTGCAGAAGCAAGAGATAAAGCTTCAAGAAGAGGTCAAGGCTTTGGAAGTTGAGGACTGTGAGAAGAACACACTACAATTGAGAGTGAAAACAGAAAAAGAACAAGCAAAAGGAACCAGAAGCTTACCTCTCATTGAGCTTAATCAAAGTTCTTCTGATTCCACTAGAAAGACAAAGATGAAGTTGCAAGTAGAAGTGAATCACATTGGTGGAACAGAATTCTTGATTAAGTTGTGCTGTGAGCAGAAGAAAGGTGGGTTTTCAAGATTGATGGAAGCTATACATTCATTTGGGCTTCATGTGGTACATGCAAACATGATCACATTTGATGGCATAGTATCAAACAATCTGATGGTTGAGGCAACTGAACAGGATATTCACCCTATGAAACTCAGAGAGTATTTGATACAGCAAACAGGTTAA 1197 0.3851 MSGMRVVEWLRPLVETKAWDYVVVWKYGNDPTRFIEWMGCCCGGGNIEHVKFEEKMDDEQYNLGPICRDTLFYHPVRTKSCEALAKFPFSISLYSSVHGEVAISQQPRWLIQQDSIGTQVLIPIFGGLVELFTANLIPKDINMMEFISAHFCVSINQEAISEQSYTNRNFNDHYTLTPSIEGLSSGSNPSTEHSKGEDKEKLVREPQKEVYHAKNLVTERNRRKRINKGLFTLRSLVPNITKMDRAAILEDAIEYIKELQKQEIKLQEEVKALEVEDCEKNTLQLRVKTEKEQAKGTRSLPLIELNQSSSDSTRKTKMKLQVEVNHIGGTEFLIKLCCEQKKGGFSRLMEAIHSFGLHVVHANMITFDGIVSNNLMVEATEQDIHPMKLREYLIQQTG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01957 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 274 IPR036638 GO:0046983
Car07g01957 398 PANTHER TRANSCRIPTION FACTOR BHLH90 61 397 - -
Car07g01957 398 Coils Coil 249 276 - -
Car07g01957 398 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 397 - -
Car07g01957 398 SMART finulus 216 265 IPR011598 GO:0046983
Car07g01957 398 CDD ACT_UUR-ACR-like 333 395 - -
Car07g01957 398 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 151 IPR025610 -
Car07g01957 398 Pfam Helix-loop-helix DNA-binding domain 217 260 IPR011598 GO:0046983
Car07g01957 398 Gene3D - 202 277 IPR036638 GO:0046983
Car07g01957 398 MobiDBLite consensus disorder prediction 180 203 - -
Car07g01957 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01957 Car-Chr7 22503368 22506540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01957 91 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 28.329 5.01e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g01957 bHLH-MYC_N 7.9e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01957 - - cam:101515167 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01957 07 22503368 22506540 Car07g01957 07 22503368 22506540 ECH