Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01941 ATGAGTGAAGGAGAAAAGTTTGAGGTAGATAGAAAGGAGGGTATGGCATTGGATTGGAGGTTTTTGAGTGCCAACCTTGCAAATTCATCGGATGGTTTGGTTTCCATGGAAAATTCTATGAATATAATTGGTTCTTCTTCATGTTCTAATTCAATGGTTGATTCATATGGTCCAAACTTCTTGGACCTTCTTCCAAATTCTGAAAACTTAGGGTTTTGTGATGTTAATGCTCATCAGAGCAATGTGAGCTCTTCAATCACAGATGGAATAAGGAAAGATGGATTTAGCTTTGTAAGAGTTGGTCATGATGATAATAGAACACTAGGAATGAGTTGGAACCTAAACCTTGCTAGTTCTATGATGATGAAGACGGATGGTATTTTACCAAATGGAAGTTTGTCACAGTTTCCAACTGATTCTGGATTTATTGATGCCGTAAGAATGTCATGCTTTAGTGCCGCCGGAGGTTTCGGAGATACGATGAACTCGTGTGGAATTCCCCAATCTATGGCTCTACAAGCTCTTGGAGGGTGTTCTAATGAGGGTGATAGAGGAGAATCAAGTGGTGATGATGGTGTCGGTAGCCATCATGATTCCCAAATGTTGGATTGTACAAGTGAGGAACCTTCTATTAAAGGTCTAAACCCAAAGAAAAGGAAAAGAAAAGGGCAGGATAATGATAGTGATAAAGCCACTCGGAAGGGCAACTGTGAGAGTAGACAGAAGGGAGAGCAGCAACCAACTTCAACCACTAAGGCGGCTTCTAAGAAGAATGCCAAACAAGGGTCTCAAGCTTCTGTCCCGACTGACGAAGGATACGTACATGTTAGGGCTCGCCGTGGTCAAGCAACAAATAGTCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATTAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCACTGATGCTAGATGAAATCATTAACTATGTACAATCTCTTCAACAACAGGCTGAGTTTTTATCAATGAAACTTGCATCAGTAAATCCACATGTGGATTTTAATCTCGAAGAGCTGCTTCCAAAAGATGTTCTTCAACATCGACCTGGTCCGTCATCTGTACTAGGGTTTCTCACAGAAATGCCAGTGACTTTTCCTTCATCATTACACTCGCCTCAACCAGGACTGACTCGTTTGACTCTACCTAACATGGCAAATTCATCAAATATACTTGAGCGGACCGTTCAACAACAGGGAGGATTTAAAGAGGCAAATCAGGTTAATCCATTGCAAGGAGCAAAGCACTGA 1302 0.4178 MSEGEKFEVDRKEGMALDWRFLSANLANSSDGLVSMENSMNIIGSSSCSNSMVDSYGPNFLDLLPNSENLGFCDVNAHQSNVSSSITDGIRKDGFSFVRVGHDDNRTLGMSWNLNLASSMMMKTDGILPNGSLSQFPTDSGFIDAVRMSCFSAAGGFGDTMNSCGIPQSMALQALGGCSNEGDRGESSGDDGVGSHHDSQMLDCTSEEPSIKGLNPKKRKRKGQDNDSDKATRKGNCESRQKGEQQPTSTTKAASKKNAKQGSQASVPTDEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKALMLDEIINYVQSLQQQAEFLSMKLASVNPHVDFNLEELLPKDVLQHRPGPSSVLGFLTEMPVTFPSSLHSPQPGLTRLTLPNMANSSNILERTVQQQGGFKEANQVNPLQGAKH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01941 433 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 33 174 IPR024097 GO:0006355
Car07g01941 433 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 173 425 IPR024097 GO:0006355
Car07g01941 433 MobiDBLite consensus disorder prediction 177 271 - -
Car07g01941 433 MobiDBLite consensus disorder prediction 184 203 - -
Car07g01941 433 SMART finulus 288 338 IPR011598 GO:0046983
Car07g01941 433 MobiDBLite consensus disorder prediction 241 268 - -
Car07g01941 433 MobiDBLite consensus disorder prediction 220 240 - -
Car07g01941 433 Gene3D - 279 351 IPR036638 GO:0046983
Car07g01941 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 351 IPR036638 GO:0046983
Car07g01941 433 CDD bHLH_AtBPE_like 272 357 - -
Car07g01941 433 PANTHER BHLH TRANSCRIPTION FACTOR 173 425 - -
Car07g01941 433 PANTHER BHLH TRANSCRIPTION FACTOR 33 174 - -
Car07g01941 433 Pfam Helix-loop-helix DNA-binding domain 285 333 IPR011598 GO:0046983
Car07g01941 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 332 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01941 Car-Chr7 22284693 22288045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01941 29 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 42.212 6.96e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g01941 HLH 7.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01941 - - mtr:MTR_8g065740 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01941 07 22284693 22288045 Car07g01941 07 22284693 22288045 ECH