Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01934 ATGTGTGAACCTCCTGGAGACATACTTGTTTTTCTCACTGGAGAGGAAGAGAAAGAAGATGCATGCCGCAAAATATCTAAAGAAGTTGCAAATTTGGGGGATCAAGTGGGCCTTGTCCCTGTGAAAGCAGTACCATTGTATTCTACTCTTTCCCCAGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCAGTAAAAGAGGGAGGCCCCGCTGGAAGGAAGATTGTGAATGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATTCAAGGAGTAGAAGCCGTCACAAAGTTGTATGTTTCCAACTTGGACCGTGGAATGAGAGATGCAGATGGTAGGTCGAAGGGTTTTGGTTTTGTCAATTTCGAAAACCCAGACAATGCTGCTAATGTTGTGGAGGCATTGAATGGGTGTCCTGATTATGATTCTGGGAATAGTGGTCCCACAGATTGTGGTGTCCTTGAGAAGTGGACTGTGGGATTAGATTTTTTGTGGAGGAAACTCTCCAGCCTTTGTCATGGCAGCTGTTGCAGCCCTTATGAGTGGGCTCTTAGCTGA 561 0.4599 MCEPPGDILVFLTGEEEKEDACRKISKEVANLGDQVGLVPVKAVPLYSTLSPAMQQKIFEPAPPPVKEGGPAGRKIVNDLFEDSLRAAGIQGVEAVTKLYVSNLDRGMRDADGRSKGFGFVNFENPDNAANVVEALNGCPDYDSGNSGPTDCGVLEKWTVGLDFLWRKLSSLCHGSCCSPYEWALS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01934 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 138 IPR000504 GO:0003723
Car07g01934 186 SUPERFAMILY RNA-binding domain, RBD 93 139 IPR035979 GO:0003676
Car07g01934 186 Gene3D - 95 147 IPR012677 -
Car07g01934 186 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 90 - -
Car07g01934 186 PANTHER ATP-DEPENDENT RNA HELICASE 1 90 - -
Car07g01934 186 Gene3D - 1 94 IPR027417 -
Car07g01934 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01934 Car-Chr7 22170673 22171305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01934 108 138 Eukaryotic Initiation Factors Gene Family AT1G49760 74.194 3.73e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01934 K12820 - pvy:116132600 145.206