Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01917 ATGGATTATAGCAGAGACGGTAACGTCGTTCAAATTATCACCGCCGGCGGAGGCGGCGGCGATAGCTGGTCGAGTGACCAAGCGGATTGGGCAACGGAAGATGAGTATCGATACTGGAACGGAAATGAAGCCGGCGAAACAACGCCGTCTTCGAATTCAAATTGCGACCAACCGAGACAACAGAGGTCGGGGAGCGAGCCGCCGAGCAAGAAATCGAGAAGCAATTCGCAGGACAACGGTGGCGGAAGTAACGGCGGCGGTTCGAATCGGGCGAAAGCTATTGGGAAAATGTTCTTTAAGACGAAACTGTGCTGCAAGTTTCGTGTGGGGACGTGTCCTTATGTAACTAACTGTAATTTTGCTCATAGTGTTGAGGAGCTTCGGCGGCCGCCTCCGAATTGGCAGGAGATTGTGGCGGCGCACGAGGAAGAGAGGTCTGTGTTTATGAATGAGCAGCCAAGGGAGGAGTTTCAGATTCCAACCGTGGGGTCTTCGACTTTTGTTGGGGAGAGTATGAATCAGAGGTCTTATAAGGGTAGACATTGTAAGAAGTTTTATACTGAAGAAGGTTGTCCTTATGGAGAAAGTTGCACTTTTCTTCACGATGAACAATCGAAGAATCGTGAAAGTGTTGCTATTAGTTTAGGTCCTGGTGGTTAtggtggtggtggtggtggtagtgttggtggcggtggaggtggtAGTACTGGTAGCGGTAGTGTTGGTGGTGGTTCTGCTGCTGCTGTAGGGGGGAATGGTGCTAATTTGAAACCTTCAAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACAGGGTATTGCCCCTTTGGGAACAAATGTCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAAGCAGAGACACTGCATCTGCTGTTGCGTCTGAAGCAAAACAGGGAGTACCTTCAAAAACTCATGCTGATAATGTGGTTGCATCAACTCCTCCGATTGCGCATTCTGATGTTTATCATATCGGTGTCCCTTCGCAGAGGCCTTCCATTGTGAGTCAGAGACCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCGGATAAAATCAGTAGGATATATGGCGATTGGATAGATGACATCGAATAG 1146 0.4607 MDYSRDGNVVQIITAGGGGGDSWSSDQADWATEDEYRYWNGNEAGETTPSSNSNCDQPRQQRSGSEPPSKKSRSNSQDNGGGSNGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYVTNCNFAHSVEELRRPPPNWQEIVAAHEEERSVFMNEQPREEFQIPTVGSSTFVGESMNQRSYKGRHCKKFYTEEGCPYGESCTFLHDEQSKNRESVAISLGPGGYGGGGGGSVGGGGGGSTGSGSVGGGSAAAVGGNGANLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAVASEAKQGVPSKTHADNVVASTPPIAHSDVYHIGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDIE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01917 381 ProSiteProfiles Zinc finger C3H1-type profile. 260 288 IPR000571 GO:0046872
Car07g01917 381 MobiDBLite consensus disorder prediction 1 89 - -
Car07g01917 381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 20 218 - -
Car07g01917 381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 252 378 - -
Car07g01917 381 PANTHER CCCH ZINC FINGER/TIS11-RELATED 252 378 IPR045877 GO:0003729
Car07g01917 381 PANTHER CCCH ZINC FINGER/TIS11-RELATED 20 218 IPR045877 GO:0003729
Car07g01917 381 Gene3D - 168 215 - -
Car07g01917 381 SMART c3hfinal6 98 124 IPR000571 GO:0046872
Car07g01917 381 SMART c3hfinal6 260 287 IPR000571 GO:0046872
Car07g01917 381 SMART c3hfinal6 176 203 IPR000571 GO:0046872
Car07g01917 381 MobiDBLite consensus disorder prediction 347 366 - -
Car07g01917 381 Gene3D - 254 292 - -
Car07g01917 381 Gene3D - 95 129 - -
Car07g01917 381 MobiDBLite consensus disorder prediction 43 86 - -
Car07g01917 381 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872
Car07g01917 381 SUPERFAMILY CCCH zinc finger 96 129 IPR036855 GO:0046872
Car07g01917 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 99 123 IPR000571 GO:0046872
Car07g01917 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 286 IPR000571 GO:0046872
Car07g01917 381 SUPERFAMILY CCCH zinc finger 174 204 IPR036855 GO:0046872
Car07g01917 381 SUPERFAMILY CCCH zinc finger 257 291 IPR036855 GO:0046872
Car07g01917 381 ProSiteProfiles Zinc finger C3H1-type profile. 98 125 IPR000571 GO:0046872
Car07g01917 381 Pfam CCCH-type zinc finger 180 202 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01917 Car-Chr7 21905503 21909358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01917 262 290 C3H Transcription Factor Family AT1G68200 62.069 3.78e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car07g01917 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01917 - - gmx:100788208 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01917 07 21905503 21909358 Car07g01917 07 21905503 21909358 ECH