Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01905 ATGACAGACTACCGTTCACCGCCTACAATGAATATCTGGACCGACGAAAACTCCTCCGTCATGGAAGCCTTCATGAGCACCTCTGACCTCTCCTCTCTCTGGCTTCCAACACCGCATTCCGCCGCATCAACCACCACACCACTCACCGACCCGACCCGAACTCAAACACAGCCTCTCTTCAACCAAGAAACTCTCCAGCACCGTCTTCAATCATTAATAGAAGGCTCGAGAGAGAGCTGGACCTACGCAATTTTCTGGCAACCCTCTCACGACTATTCCTCCGGCGCACCACTCCTCGGTTGGGGTGACGGATATTACAAAGGCGAAGACGAAAAAGAAAAAGGGAAAAAAGTAATCAAAACCACGTCGCCTGAAGAACAAGCGCATCGTAAAAAAGTTCTCCGTGAACTTAATTCCTTAATTTCTGGCTCTTCTGGGTCACCTGATGATGCTGTTGAGGAAGATGTGACTGACACTGAGTGGTTCTTTCTCACGTCGATGACTCAATCTTTCGTCAACAGCAGCGGCTCTTTAAGCCAAGCTTACTTTAATTCCACCCCTGTTTGGATCTCAGGGCCTGACAGGCTTTCCATTTCTGCCTGTGAGCGGGCCCGTCAGGCCCAATTCCTTGGGCTTCAGACTTTGGTATGTATCCCAACACCGTCTTCAAACGGCGTCGTGGAGCTTGCATCTACGGAAATAATTCCGTACAGCTCCGATCTGATGGAAAAAGTCCGTGCTTTGTTTAATTTCAACAATCCCGAGGCAGGATCTTGGCCATTGAATTCCGTTACAACTGATCAAAGCGAGAATGATCCTTCCTCTCTTTGGCTCAACGATCCTTCTGGCTCTGCTGGTATTGAAATTAAAGATTCCGTCAACGCCGTTAATACAACCGTTTCTGCAAATGCAGCAATTGGTAAAAGTTTGCAGTTTGAAACCCAAACACATGGTTCTTCAAGCACTCTGACGGAAACACCAAACGTTATTCACGTTCACAACGCTCAGCGTAACCAGAATCAGAACCAAAGCTTCTTCCCTAAAGAATTGAATTTTTCTAGTTCAATGAAACCAGAATCCGGCGAGATTCTGAACTTCGGTGAGAGTAAAAAGAGCTCTTACAGCGCCGTTAATGGAAACGGAAATGGAAATTTCTTTTCTGGTCAGTCACCGTTTGCTGCCGGTGAAGAAAACAGAAAGAGAAGGTCTCCTGTTTCCAGAAGCAGCGTTGACGATGGAATACTTTCCTTCACTTCCGGCGTACTTTTACCGGCGTCAAATATGAAATCCAGCGGCGGAATTGGTACCGGCGGAGATTCCGATCAATCAGATCTGGAAGTTTCCGTCGTGAAGGAAGCCGACAGCAGCAGAGTAATCGAACCAGAGAAGCGGCCACGGAAACGAGGACGAAAACCGGCGAACGGAAGAGAAGAGCCGTTGAATCACGTTGAAGCGGAGAGACAAAGAAGAGAAAAGCTGAATCAAAGATTCTACTCTCTTCGCGCTGTAGTTCCCAACGTTTCTAAAATGGACAAAGCATCACTTCTCGGCGACGCGATTTCTTACATAAACGAATTAAAAGAAAAGCTTCAAGGGCTTGAATCATCGAAAGGCGAATTGGAAAAACAATTAGATACAACAAAAAAGGAACTCGAACTTGCAAGTAATAAAAATCCACTACTTCCACTGGACAAAGAAAAATTGAAAACAAATTGTAAGTTGATTGATTTGGATATAGAAGTCAAGGTCATAGGATGGGATGCAATGATTAGGGTTCAATGTAGTAAGAAGAATCACCCTGCAGCGAAATTGATGGTGGCGTTGAAAGAATTGGATGTTGAAGTGAATCATGCAAGCGTGTCTGTAGTGAATGATTTGATGATTCAACAAGCTACAGTCAACATGGGAAATCAATTTTACACCAAGGAACAGCTTTTGTCAGTTCTATCTTCCAAAATTGGCGATGCACGATGA 1974 0.4524 MTDYRSPPTMNIWTDENSSVMEAFMSTSDLSSLWLPTPHSAASTTTPLTDPTRTQTQPLFNQETLQHRLQSLIEGSRESWTYAIFWQPSHDYSSGAPLLGWGDGYYKGEDEKEKGKKVIKTTSPEEQAHRKKVLRELNSLISGSSGSPDDAVEEDVTDTEWFFLTSMTQSFVNSSGSLSQAYFNSTPVWISGPDRLSISACERARQAQFLGLQTLVCIPTPSSNGVVELASTEIIPYSSDLMEKVRALFNFNNPEAGSWPLNSVTTDQSENDPSSLWLNDPSGSAGIEIKDSVNAVNTTVSANAAIGKSLQFETQTHGSSSTLTETPNVIHVHNAQRNQNQNQSFFPKELNFSSSMKPESGEILNFGESKKSSYSAVNGNGNGNFFSGQSPFAAGEENRKRRSPVSRSSVDDGILSFTSGVLLPASNMKSSGGIGTGGDSDQSDLEVSVVKEADSSRVIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKEKLQGLESSKGELEKQLDTTKKELELASNKNPLLPLDKEKLKTNCKLIDLDIEVKVIGWDAMIRVQCSKKNHPAAKLMVALKELDVEVNHASVSVVNDLMIQQATVNMGNQFYTKEQLLSVLSSKIGDAR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01905 657 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 65 249 IPR025610 -
Car07g01905 657 MobiDBLite consensus disorder prediction 260 280 - -
Car07g01905 657 PANTHER MYC 34 654 IPR045084 GO:0003700|GO:0006355
Car07g01905 657 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 546 IPR036638 GO:0046983
Car07g01905 657 MobiDBLite consensus disorder prediction 426 487 - -
Car07g01905 657 Coils Coil 523 557 - -
Car07g01905 657 Pfam Helix-loop-helix DNA-binding domain 481 526 IPR011598 GO:0046983
Car07g01905 657 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 477 526 IPR011598 GO:0046983
Car07g01905 657 MobiDBLite consensus disorder prediction 387 410 - -
Car07g01905 657 MobiDBLite consensus disorder prediction 426 443 - -
Car07g01905 657 CDD bHLH_AtAIB_like 474 550 - -
Car07g01905 657 Gene3D - 469 557 IPR036638 GO:0046983
Car07g01905 657 SMART finulus 483 532 IPR011598 GO:0046983
Car07g01905 657 MobiDBLite consensus disorder prediction 445 487 - -
Car07g01905 657 PANTHER TRANSCRIPTION FACTOR MYC2 34 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01905 Car-Chr7 21537905 21540503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01905 1 654 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.341 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g01905 bHLH-MYC_N 1.4e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01905 K13422 - gmx:100790854 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01905 07 21537905 21540503 Car07g01905 07 21537905 21540503 ECH