Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01896 ATGTCTCCGCCACTGCTGGTTACTGAAGAGGAACGGCAGAGCAACACCTCAACGGTAGCATCTGCGTCTCCTCAATCCTTGGACTGTTTCTCCCAAAATGGGGCTGGATTGAAAGAACGCAATTACCTTGGATTGTCGGATTGCTCATCGGTGGACAGTTCTACTGTACCGAGCTTGTCCGATGAGAAAAAAGAGAATCTAAATTTGAAAGCTACGGAGTTGAGGCTAGGACTTCCTGGTTCCCAGTCGCCCGAAAGGGATCCAGATCTTTTTTTGTTGAGCTCAACAAAACTTGACGAGAAACCGTTGTTCCCTTTGCTTCCTACAAAAGATGGTATCTGCTCATTGTCACAGAAGAATGTGGTTTCGGGAAACAAAAGAGGTTTTTCCGACGCAATGGATGGGTTCCGTGAGGGTAAATATACCGGTAATGCACGTGTAAACATACTGCTTTCGCCTAGACCATCTGGAGCTCAGCCAACTACAATTAAAGAAATACCAAACAAGGTGTTACAAGAAAGCCCTTGTGCAGCAAATGGAACTGGACATAACCATACAGGAAATCCAATCAGTGGCAGTGCACCAGCTTCTAAAGCACAAGTTGTTGGCTGGCCTCCAATTAGATCATTTAGGAAAAACTCATTGGCCACCGCTTCAAAGAACAACGATGAAGTGGATGGAAAACCAGGTCCAACCGCGCTCTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATCTTAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCGCATGGAGCTCCAGGAAGAGAAATGCTGAGTGAGAGCAAGTTGAAGGACTTCCTGCATGGTTCTGAATATGTGGTAACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCGTGGGACATGTTCATTGATACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGAGCCATGGAGAAATCCAAGAGCAGGTGCTAG 1062 0.452 MSPPLLVTEEERQSNTSTVASASPQSLDCFSQNGAGLKERNYLGLSDCSSVDSSTVPSLSDEKKENLNLKATELRLGLPGSQSPERDPDLFLLSSTKLDEKPLFPLLPTKDGICSLSQKNVVSGNKRGFSDAMDGFREGKYTGNARVNILLSPRPSGAQPTTIKEIPNKVLQESPCAANGTGHNHTGNPISGSAPASKAQVVGWPPIRSFRKNSLATASKNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01896 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 346 IPR003311 GO:0005634|GO:0006355
Car07g01896 353 MobiDBLite consensus disorder prediction 178 195 - -
Car07g01896 353 MobiDBLite consensus disorder prediction 7 25 - -
Car07g01896 353 MobiDBLite consensus disorder prediction 1 25 - -
Car07g01896 353 Gene3D - 230 346 - -
Car07g01896 353 PANTHER AUXIN-INDUCED PROTEIN 2 346 - -
Car07g01896 353 SUPERFAMILY CAD & PB1 domains 231 334 - -
Car07g01896 353 MobiDBLite consensus disorder prediction 178 197 - -
Car07g01896 353 ProSiteProfiles PB1 domain profile. 233 337 IPR000270 GO:0005515
Car07g01896 353 Pfam AUX/IAA family 72 344 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01896 Car-Chr7 21384937 21390488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01896 237 343 B3 DNA Binding Superfamily AT4G23980 30.841 2.76e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car07g01896 AUX_IAA 1.1e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01896 K14484 - gmx:100500373 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00970 08 9008046 9013713 Car07g01896 07 21384937 21390488 PCT