Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01888 ATGATGTTGAAGATGAAGGTGTTGTTGAGTGAGAAGAAAAAACATGTTATCTTGTTTTTGTGGTTTGGAATGATTTTGCAGCTCTTGCTATGTGCTTGTTCTGAAGACACATCATTGAGCATTGGATCAACATGTATAGTCAAGCTGAATACAGAAGACCAACGACAGTTGGTTATTGACAATGGCATTGTTTTGGTCACTTTGTCAATACCCGAGGGCTACATTCTTGGAATATCTTATAATGGAATTGACAACATTCTTGAATCTGAAGACCAAGAACAAGATAGAGGGTACTTCGACGTCGTTTGGAATGAACCAGGAAAGCTTGGGATGTTCCAGAGAATCCACGGGACACAATTTTCGGTTATAACAGCTGATGAGAATTTGGTGGAGGTTTCATTTTTAAGATCATGGACACCCTCCATGAGTGGCACCAATGTACCCATAAACATTGACATAAGGTACATTTTCAGAAGTGGTGATTCAGGATTTTATGCATATGCAATATTCGATCGCCCAGAAGGAATGCCAGCAGTTGAAGTTGATCAAATTAGATTTGTTTTCAAACTCAATCAAAACAGGTTCAACTACATGGCTGTGTCTGATATAAGGCAAAGAACCATGCCAACAATGAGAGATAGACAAACAGGAGAAGCCCTAGATTACCCAGAAGCAGTTCGATTAACCAAACCAATTAACCCACAATTTAGAGGAGAAGTGGATGACAAATATCAGTACTCATGTGAAAACAGATATAACACTGTTCATGGATGGATTAGTTTTGATGCAAATGTGGGTTTTTGGATGATAACACCAAGTAATGAGTTTCGCAATGGTGGGCCCATTAAACAGGACCTTACTTCTCATGTTGGACCCATCACTCTCTCTATGTTTGTGAGCACTCACTATGCTGGAAAGGAAGTAACCATGGCATTTGAAGAAGGAGAAACTTATAAAAAGGTTTTTGGCCCTGTATTTATTTACCTTAACTCTGCTTCAAGTGATGATAGTAAACAATCCCTATGGTCAGATGCTGTACTACAGCGATCCCAAGAAGTCCAAAATTGGCCTTATAATTTTCCTAGATCACAACATTTCATTCCACCAAATCAAAGGGGAACAGTATTTGGAAGATTACTAGTCCAAGATTGGTACTTCAATGGAGGGAGATTTCAATTTACTAGTGCTTATGTCGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAGAGAAAGCAAGGGATATCAATTTTGGACTCAAGCTGATGAAAAGGGATACTTTAAAATAAATAATATTGTGCCTGGTGACTATAATTTGTATGCTTGGGTCCCAGGATTCATTGGTGATTATAAATATAATGCTACAATCACCATCATCCCAGGAGGAGTCATACAATTAAATTCACTTATATATAATCCTCCAAGAAATGGACCAACAATTTGGGAAATTGGAATCCCAGATCGTTTGGCTTCAGAATTTTATGTACCAGACCCTTTTCCTACTCTTATGAACAGATTATACACTGAACCACGCAGAGACAAGTTTAGGAATTATGGGTTATGGGAACGTTACAAGGAATTATATCCAAATAATGACCTTGTTTACACTGTTGGTGTTGACAAGGATAGGGATTGGTTTTTTGCTCAAGTTACAAGGAACATAGATAATAAGACATATGCGCCAACAACATGGCAGATTATATTTGAACATGAAAATGACATAATAATTGGAAGCTACACACTACAATTGGCCTTGGCTAGTGCTGCTGATGCTGACCTACAGGTTCGGTTCAATGACCCAAGCGTGTATCCACCCCACTTTGCAACAGGGCACATAGGAGGAGATAATGCAATAGCAAGGCATGGAATTCATGGATTGCATTGGTTATTCAGCATTGATGTGCCAAGTAATCTTCTTGTGAAAGGAAAAAATATCATTTATCTAAGACAATCAAGAGCCATAAATCAATTCCAAGGAGTTATGTATGATTATATTCGGTTAGAACGACCACCAATAATTTGA 2025 0.3842 MMLKMKVLLSEKKKHVILFLWFGMILQLLLCACSEDTSLSIGSTCIVKLNTEDQRQLVIDNGIVLVTLSIPEGYILGISYNGIDNILESEDQEQDRGYFDVVWNEPGKLGMFQRIHGTQFSVITADENLVEVSFLRSWTPSMSGTNVPINIDIRYIFRSGDSGFYAYAIFDRPEGMPAVEVDQIRFVFKLNQNRFNYMAVSDIRQRTMPTMRDRQTGEALDYPEAVRLTKPINPQFRGEVDDKYQYSCENRYNTVHGWISFDANVGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFIYLNSASSDDSKQSLWSDAVLQRSQEVQNWPYNFPRSQHFIPPNQRGTVFGRLLVQDWYFNGGRFQFTSAYVGLALPGDAGSWQRESKGYQFWTQADEKGYFKINNIVPGDYNLYAWVPGFIGDYKYNATITIIPGGVIQLNSLIYNPPRNGPTIWEIGIPDRLASEFYVPDPFPTLMNRLYTEPRRDKFRNYGLWERYKELYPNNDLVYTVGVDKDRDWFFAQVTRNIDNKTYAPTTWQIIFEHENDIIIGSYTLQLALASAADADLQVRFNDPSVYPPHFATGHIGGDNAIARHGIHGLHWLFSIDVPSNLLVKGKNIIYLRQSRAINQFQGVMYDYIRLERPPII 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01888 674 CDD RGL4_M 371 470 IPR029413 -
Car07g01888 674 Gene3D - 49 347 IPR014718 GO:0030246
Car07g01888 674 Gene3D - 477 669 - -
Car07g01888 674 SUPERFAMILY Galactose mutarotase-like 51 337 IPR011013 GO:0003824|GO:0005975|GO:0030246
Car07g01888 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 672 - -
Car07g01888 674 Pfam Polysaccharide lyase family 4, domain II 395 466 IPR029413 -
Car07g01888 674 CDD RGL4_C 482 669 - -
Car07g01888 674 CDD RGL4_N 50 337 - -
Car07g01888 674 Pfam Polysaccharide lyase family 4, domain III 480 668 IPR029411 -
Car07g01888 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 672 - -
Car07g01888 674 Gene3D - 367 469 - -
Car07g01888 674 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Car07g01888 674 Pfam Rhamnogalacturonate lyase family 47 240 IPR010325 -
Car07g01888 674 SUPERFAMILY Galactose-binding domain-like 477 669 IPR008979 -
Car07g01888 674 SUPERFAMILY Starch-binding domain-like 368 469 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01888 Car-Chr7 21258200 21265879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01888 43 672 Polysaccharide Lyase AT1G09910 54.818 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01888 K18195 - gmx:100776664 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00986 08 9236755 9243498 Car07g01888 07 21258200 21265879 PCT