Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01880 ATGGATTCGTCACTAAGTCCAAACCAGAAACTATTTACATTTCCCAAAATTGAAGATTTCTCCCTGAACAATCCAAATTCTGTTTCAGTATATGATATCGAATCGATACCGCTTTCTAATGATAAAGCCATTGTTGCGGTGGATTCTGATACTTCCAAAAGCACTTCCCAAAGAACTTCAATATACAGAGGAGTCACAAGGCACATATGGACGGGAAGATATGAAGCACATCTATGGGATAATAGCTATAGACGAGAGGGTCGGGTCAGGAAAGGGCGTCAAGTGTATTTGGGTGGATATGACAAGGAAGAAAAGGCTGCAAGGGCTTATGATTTGGCAGCATTGAAGCACTGGGGACCAACAGCTACCATAAACTTTCCTGTTTCCCAATATGCAAAGGAATTGGAGGAGATGAAACATGTAGGAAAGCAAGAATTTATTGCTTCACTGAGAAGGAAAAGCAGTGGTTTTTCCAGGGGAGCTTCTATATACAGGGGTGTTACAAGGCACCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGAGTTGCTGGTAACAAAGATCTATTCTTGGGAACCTTTGCAACTGAAGAGGAAGCAGCAGAGGCATACGACATTGCAGCCATAAAGTATAGAGGTGAGAAAGCCGTAACCAATTTCGACGTGAGTCGATACGATACGGTAGCTATATTGAAGACTTCTCTTCCAGTTGGTGGAGCAGCAAAACGCATGAAACCTTCCCAAGAAACAGAGAAGAAATCTCGTATGAGTACAAATGCTACCAACATTTCTACACCCTATGcagaaagtgacacagcagagtctgttgcaactacaactaatgaaggcagagtactactcactacAATGCCAACAGCAGCTGAATTCTTTCTATTATGGCCTCATCATCATTCCCATTGA 921 0.3963 MDSSLSPNQKLFTFPKIEDFSLNNPNSVSVYDIESIPLSNDKAIVAVDSDTSKSTSQRTSIYRGVTRHIWTGRYEAHLWDNSYRREGRVRKGRQVYLGGYDKEEKAARAYDLAALKHWGPTATINFPVSQYAKELEEMKHVGKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLFLGTFATEEEAAEAYDIAAIKYRGEKAVTNFDVSRYDTVAILKTSLPVGGAAKRMKPSQETEKKSRMSTNATNISTPYAESDTAESVATTTNEGRVLLTTMPTAAEFFLLWPHHHSH 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01880 306 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 56 262 - -
Car07g01880 306 CDD AP2 60 129 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 56 262 - -
Car07g01880 306 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 SMART rav1_2 61 133 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 ProSiteProfiles AP2/ERF domain profile. 61 127 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 SUPERFAMILY DNA-binding domain 162 223 IPR016177 GO:0003677
Car07g01880 306 Pfam AP2 domain 61 119 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 Pfam AP2 domain 163 214 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 Gene3D AP2/ERF domain 163 223 IPR036955 GO:0003700|GO:0006355
Car07g01880 306 Gene3D AP2/ERF domain 61 129 IPR036955 GO:0003700|GO:0006355
Car07g01880 306 MobiDBLite consensus disorder prediction 253 275 - -
Car07g01880 306 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 PRINTS Ethylene responsive element binding protein signature 203 223 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 MobiDBLite consensus disorder prediction 241 275 - -
Car07g01880 306 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Car07g01880 306 SUPERFAMILY DNA-binding domain 60 129 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01880 Car-Chr7 21132894 21136509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01880 25 276 AP2-EREBP Transcription Factor Family AT5G57390 64.173 6.27e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car07g01880 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01880 K09285 - gmx:100795280 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01008 08 9479168 9483902 Car07g01880 07 21132894 21136509 PCT